Results 21 - 40 of 68 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6998 | 3' | -58.1 | NC_001875.2 | + | 113827 | 0.67 | 0.744495 |
Target: 5'- aGCGCuCUGGGAacAGCgggucGGGGUCggGCCGCa -3' miRNA: 3'- gCGUG-GGCUUU--UCG-----UCCCAG--CGGCGa -5' |
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6998 | 3' | -58.1 | NC_001875.2 | + | 33916 | 0.67 | 0.744495 |
Target: 5'- aCGUACCCcucgucGAAAcgcAGCGGGcGUCGgCGCc -3' miRNA: 3'- -GCGUGGG------CUUU---UCGUCC-CAGCgGCGa -5' |
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6998 | 3' | -58.1 | NC_001875.2 | + | 80293 | 0.67 | 0.734778 |
Target: 5'- uCGCACuuGAcGAGCGccGUCGCCaGCg -3' miRNA: 3'- -GCGUGggCUuUUCGUccCAGCGG-CGa -5' |
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6998 | 3' | -58.1 | NC_001875.2 | + | 82187 | 0.67 | 0.734778 |
Target: 5'- uCGUGCUCGAugGGCGccGGcggccgcucguGUCGCCGCUg -3' miRNA: 3'- -GCGUGGGCUuuUCGU--CC-----------CAGCGGCGA- -5' |
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6998 | 3' | -58.1 | NC_001875.2 | + | 99366 | 0.67 | 0.734778 |
Target: 5'- gCGCGCCCGccAAGUGGccaaagCGCCGCa -3' miRNA: 3'- -GCGUGGGCuuUUCGUCcca---GCGGCGa -5' |
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6998 | 3' | -58.1 | NC_001875.2 | + | 85197 | 0.67 | 0.724973 |
Target: 5'- aGUACUgGAuGAGCcgacGGGcCGCCGCg -3' miRNA: 3'- gCGUGGgCUuUUCGu---CCCaGCGGCGa -5' |
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6998 | 3' | -58.1 | NC_001875.2 | + | 71945 | 0.67 | 0.724973 |
Target: 5'- gCGCGCuCCGcgc-GCAGccuGUCGCCGCg -3' miRNA: 3'- -GCGUG-GGCuuuuCGUCc--CAGCGGCGa -5' |
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6998 | 3' | -58.1 | NC_001875.2 | + | 105894 | 0.67 | 0.715088 |
Target: 5'- aGUACCCGAu-GGC-GGG-CGCgGCg -3' miRNA: 3'- gCGUGGGCUuuUCGuCCCaGCGgCGa -5' |
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6998 | 3' | -58.1 | NC_001875.2 | + | 41008 | 0.68 | 0.695116 |
Target: 5'- gCGCACCU--AAAGCA-GGUCGCCa-- -3' miRNA: 3'- -GCGUGGGcuUUUCGUcCCAGCGGcga -5' |
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6998 | 3' | -58.1 | NC_001875.2 | + | 125046 | 0.68 | 0.685047 |
Target: 5'- aGCgACCCGAucuGC-GGGUCGCUGa- -3' miRNA: 3'- gCG-UGGGCUuuuCGuCCCAGCGGCga -5' |
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6998 | 3' | -58.1 | NC_001875.2 | + | 102485 | 0.68 | 0.685047 |
Target: 5'- gGCgacgACCCGGAaacggaccacAAGCGGuGGgCGCCGCa -3' miRNA: 3'- gCG----UGGGCUU----------UUCGUC-CCaGCGGCGa -5' |
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6998 | 3' | -58.1 | NC_001875.2 | + | 116241 | 0.68 | 0.669865 |
Target: 5'- aCGCACCaCGGGAAGCGccuccauGGGaacauacuggcgaCGCCGCa -3' miRNA: 3'- -GCGUGG-GCUUUUCGU-------CCCa------------GCGGCGa -5' |
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6998 | 3' | -58.1 | NC_001875.2 | + | 78457 | 0.68 | 0.664787 |
Target: 5'- uGCGCCCGcAAAAGCGcucgcugCGCCGCa -3' miRNA: 3'- gCGUGGGC-UUUUCGUccca---GCGGCGa -5' |
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6998 | 3' | -58.1 | NC_001875.2 | + | 16380 | 0.68 | 0.654614 |
Target: 5'- cCGCGCCCGcuAgcucaacgcGGUAGGugcgguguucGUCGCCGCc -3' miRNA: 3'- -GCGUGGGCuuU---------UCGUCC----------CAGCGGCGa -5' |
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6998 | 3' | -58.1 | NC_001875.2 | + | 122733 | 0.69 | 0.644422 |
Target: 5'- gGCGUCCGAGuucguGGCGGGGUuagCGCCGaCUc -3' miRNA: 3'- gCGUGGGCUUu----UCGUCCCA---GCGGC-GA- -5' |
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6998 | 3' | -58.1 | NC_001875.2 | + | 93260 | 0.69 | 0.634221 |
Target: 5'- aGCugGCCCGuguAGAGCAGGaugggcaCGCCGCg -3' miRNA: 3'- gCG--UGGGCu--UUUCGUCCca-----GCGGCGa -5' |
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6998 | 3' | -58.1 | NC_001875.2 | + | 126516 | 0.69 | 0.634221 |
Target: 5'- cCGCACUCGgcGAGCAGGua-GCgCGCa -3' miRNA: 3'- -GCGUGGGCuuUUCGUCCcagCG-GCGa -5' |
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6998 | 3' | -58.1 | NC_001875.2 | + | 43319 | 0.69 | 0.613822 |
Target: 5'- gCGCGCgCGGGucGGCGuGGUUGCCGCc -3' miRNA: 3'- -GCGUGgGCUUu-UCGUcCCAGCGGCGa -5' |
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6998 | 3' | -58.1 | NC_001875.2 | + | 14516 | 0.69 | 0.593478 |
Target: 5'- cCGCugUCGggGgaacuuGGCGGGcaCGCCGCUu -3' miRNA: 3'- -GCGugGGCuuU------UCGUCCcaGCGGCGA- -5' |
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6998 | 3' | -58.1 | NC_001875.2 | + | 70256 | 0.69 | 0.593478 |
Target: 5'- gGCGCCCGA---GCc--GUCGCCGCUa -3' miRNA: 3'- gCGUGGGCUuuuCGuccCAGCGGCGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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