miRNA display CGI


Results 1 - 20 of 58 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6998 5' -50.6 NC_001875.2 + 74545 0.66 0.990211
Target:  5'- -----cGaCGCGCGCCcgUUCGcguuGGAGCGc -3'
miRNA:   3'- uuuuauC-GUGCGCGGa-AAGC----UCUCGC- -5'
6998 5' -50.6 NC_001875.2 + 76809 0.66 0.990211
Target:  5'- ----aAGCugGCGUgUUUCGccGAGCu -3'
miRNA:   3'- uuuuaUCGugCGCGgAAAGCu-CUCGc -5'
6998 5' -50.6 NC_001875.2 + 93751 0.66 0.988947
Target:  5'- ----gAGCAUGCGCCacacacccacguugUCGAacGGGCGg -3'
miRNA:   3'- uuuuaUCGUGCGCGGaa------------AGCU--CUCGC- -5'
6998 5' -50.6 NC_001875.2 + 37575 0.66 0.988799
Target:  5'- cGAGUGG-AUGCGCCgg-CGcGAGCGc -3'
miRNA:   3'- uUUUAUCgUGCGCGGaaaGCuCUCGC- -5'
6998 5' -50.6 NC_001875.2 + 90444 0.66 0.988799
Target:  5'- -----cGCGCGCGCagaggcgUCGGuGGGCGg -3'
miRNA:   3'- uuuuauCGUGCGCGgaa----AGCU-CUCGC- -5'
6998 5' -50.6 NC_001875.2 + 52355 0.66 0.987234
Target:  5'- ----cGGCGCGUGCCg--CGccagcguccaAGAGCGc -3'
miRNA:   3'- uuuuaUCGUGCGCGGaaaGC----------UCUCGC- -5'
6998 5' -50.6 NC_001875.2 + 88808 0.66 0.987234
Target:  5'- uGAAAUAGCcCGCGCCcg-CGGcGcGCGg -3'
miRNA:   3'- -UUUUAUCGuGCGCGGaaaGCU-CuCGC- -5'
6998 5' -50.6 NC_001875.2 + 16917 0.66 0.987234
Target:  5'- ----cGGCGCGgGCCUcgUGuuuGAGCGc -3'
miRNA:   3'- uuuuaUCGUGCgCGGAaaGCu--CUCGC- -5'
6998 5' -50.6 NC_001875.2 + 96602 0.66 0.985505
Target:  5'- ----cAGCGCGCGCUUUUUGu--GCa -3'
miRNA:   3'- uuuuaUCGUGCGCGGAAAGCucuCGc -5'
6998 5' -50.6 NC_001875.2 + 109934 0.66 0.985505
Target:  5'- -----uGCACGCGCCgcucacCGcGGAGCa -3'
miRNA:   3'- uuuuauCGUGCGCGGaaa---GC-UCUCGc -5'
6998 5' -50.6 NC_001875.2 + 45107 0.66 0.983602
Target:  5'- -----cGUGCGCGCCUUcaugugCGAcGAGCa -3'
miRNA:   3'- uuuuauCGUGCGCGGAAa-----GCU-CUCGc -5'
6998 5' -50.6 NC_001875.2 + 80876 0.66 0.983602
Target:  5'- ----cGGCGCGCGCCaaagagUgGcAGAGCa -3'
miRNA:   3'- uuuuaUCGUGCGCGGaa----AgC-UCUCGc -5'
6998 5' -50.6 NC_001875.2 + 15085 0.66 0.981517
Target:  5'- -----cGCGCaGCGCCUggUUGAG-GCGg -3'
miRNA:   3'- uuuuauCGUG-CGCGGAa-AGCUCuCGC- -5'
6998 5' -50.6 NC_001875.2 + 51208 0.66 0.981517
Target:  5'- ---cUGGCGC-CGCCcgUCGAGcGCGc -3'
miRNA:   3'- uuuuAUCGUGcGCGGaaAGCUCuCGC- -5'
6998 5' -50.6 NC_001875.2 + 87843 0.67 0.979239
Target:  5'- ----gGGCACgGCGCCcgUCGGGcuguccguGGCGg -3'
miRNA:   3'- uuuuaUCGUG-CGCGGaaAGCUC--------UCGC- -5'
6998 5' -50.6 NC_001875.2 + 52446 0.67 0.979239
Target:  5'- gGAAAUGGUGUGCGCCga-CGAGgAGCu -3'
miRNA:   3'- -UUUUAUCGUGCGCGGaaaGCUC-UCGc -5'
6998 5' -50.6 NC_001875.2 + 85226 0.67 0.979239
Target:  5'- -cGGUAGCGC-CGCaugUCGAcGAGCGc -3'
miRNA:   3'- uuUUAUCGUGcGCGgaaAGCU-CUCGC- -5'
6998 5' -50.6 NC_001875.2 + 36650 0.67 0.979239
Target:  5'- gAAGAUGGCcgcgucguGCGCGCUgagcUCGGGGcGCGu -3'
miRNA:   3'- -UUUUAUCG--------UGCGCGGaa--AGCUCU-CGC- -5'
6998 5' -50.6 NC_001875.2 + 26270 0.67 0.974068
Target:  5'- cAAGAUGuaCACGCGCCU--UGAGuGCGa -3'
miRNA:   3'- -UUUUAUc-GUGCGCGGAaaGCUCuCGC- -5'
6998 5' -50.6 NC_001875.2 + 11561 0.67 0.968019
Target:  5'- -----cGUACGCGCCgccgaagCGGGgAGCGg -3'
miRNA:   3'- uuuuauCGUGCGCGGaaa----GCUC-UCGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.