miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7000 3' -59.7 NC_001875.2 + 31559 0.66 0.662415
Target:  5'- -cGcuGCAGGUUGGGCccGGCGGCuucCUUg -3'
miRNA:   3'- uaCccUGUCCAACCCG--UCGCCGu--GAA- -5'
7000 3' -59.7 NC_001875.2 + 116871 0.66 0.662415
Target:  5'- --cGGGCGuGUUGGGCGaCGGCACa- -3'
miRNA:   3'- uacCCUGUcCAACCCGUcGCCGUGaa -5'
7000 3' -59.7 NC_001875.2 + 84385 0.66 0.617862
Target:  5'- -cGGGGCGGcGUcGguagccggagcuucGGCGGCGGCGCg- -3'
miRNA:   3'- uaCCCUGUC-CAaC--------------CCGUCGCCGUGaa -5'
7000 3' -59.7 NC_001875.2 + 11982 0.67 0.610611
Target:  5'- cUGGcGACGGcGUUGGGCgcgggugugguGGCGaGCGCg- -3'
miRNA:   3'- uACC-CUGUC-CAACCCG-----------UCGC-CGUGaa -5'
7000 3' -59.7 NC_001875.2 + 108241 0.67 0.600268
Target:  5'- cUGGcGGCcGGcUGGGCuGCGGCAUc- -3'
miRNA:   3'- uACC-CUGuCCaACCCGuCGCCGUGaa -5'
7000 3' -59.7 NC_001875.2 + 35368 0.67 0.579661
Target:  5'- --cGGGCAGG-UGGaGCAGCuggaGGCGCUg -3'
miRNA:   3'- uacCCUGUCCaACC-CGUCG----CCGUGAa -5'
7000 3' -59.7 NC_001875.2 + 3199 0.67 0.569412
Target:  5'- -aGaGACAGGUUGcGGCGGCGGUu--- -3'
miRNA:   3'- uaCcCUGUCCAAC-CCGUCGCCGugaa -5'
7000 3' -59.7 NC_001875.2 + 113330 0.67 0.568389
Target:  5'- gGUGGGcuuuucgugcgGCGGGUcGGGCGcggcugcgucgcuGCGGCGCg- -3'
miRNA:   3'- -UACCC-----------UGUCCAaCCCGU-------------CGCCGUGaa -5'
7000 3' -59.7 NC_001875.2 + 124218 0.69 0.455338
Target:  5'- uUGuuGCGGGUUcaaauuuguuguugcGGGCGGCGGCACa- -3'
miRNA:   3'- uACccUGUCCAA---------------CCCGUCGCCGUGaa -5'
7000 3' -59.7 NC_001875.2 + 8809 0.7 0.433254
Target:  5'- -aGaGAauCGGGUUGGGCAgGCGGCGCg- -3'
miRNA:   3'- uaCcCU--GUCCAACCCGU-CGCCGUGaa -5'
7000 3' -59.7 NC_001875.2 + 43643 0.71 0.379226
Target:  5'- --cGGACgAGGUgucguagcugucGGGCAGCGGCACg- -3'
miRNA:   3'- uacCCUG-UCCAa-----------CCCGUCGCCGUGaa -5'
7000 3' -59.7 NC_001875.2 + 73775 0.71 0.372591
Target:  5'- -aGGGGuagaaGGGUUGuGGCGGCGGCgGCUg -3'
miRNA:   3'- uaCCCUg----UCCAAC-CCGUCGCCG-UGAa -5'
7000 3' -59.7 NC_001875.2 + 104745 0.75 0.205779
Target:  5'- -cGGGACGGGcgUGGGCGuCGGCGCc- -3'
miRNA:   3'- uaCCCUGUCCa-ACCCGUcGCCGUGaa -5'
7000 3' -59.7 NC_001875.2 + 102857 1.03 0.002137
Target:  5'- gAUGGGACAGGUUGGGCAGCGGCACUUu -3'
miRNA:   3'- -UACCCUGUCCAACCCGUCGCCGUGAA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.