miRNA display CGI


Results 21 - 40 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7000 5' -59.3 NC_001875.2 + 3081 0.67 0.701404
Target:  5'- gGGGucGCCcaCGG-CGUGCACGCgCCGg -3'
miRNA:   3'- -CCUuuCGGc-GCCgGCAUGUGCGgGGU- -5'
7000 5' -59.3 NC_001875.2 + 118311 0.67 0.701404
Target:  5'- aGGGucGagGCGGCCGgccGCGCGCUgCAg -3'
miRNA:   3'- -CCUuuCggCGCCGGCa--UGUGCGGgGU- -5'
7000 5' -59.3 NC_001875.2 + 36652 0.67 0.701404
Target:  5'- aGAuGGCCGC-GUCGUGCGCGCUg-- -3'
miRNA:   3'- cCUuUCGGCGcCGGCAUGUGCGGggu -5'
7000 5' -59.3 NC_001875.2 + 65982 0.67 0.701404
Target:  5'- --uGGGCCGCGGUcuugugauCGUACGCGCUg-- -3'
miRNA:   3'- ccuUUCGGCGCCG--------GCAUGUGCGGggu -5'
7000 5' -59.3 NC_001875.2 + 41385 0.67 0.701404
Target:  5'- aGGAAGaCGCGGCCGUcguuuuCAUGUCCg- -3'
miRNA:   3'- cCUUUCgGCGCCGGCAu-----GUGCGGGgu -5'
7000 5' -59.3 NC_001875.2 + 68137 0.67 0.701404
Target:  5'- cGGcGAGGCaaucaCGCGcaccUCGUGCGCGCCCCu -3'
miRNA:   3'- -CC-UUUCG-----GCGCc---GGCAUGUGCGGGGu -5'
7000 5' -59.3 NC_001875.2 + 107508 0.67 0.691506
Target:  5'- uGAAcGCCGCGGCacgcuuGUugGCGCCg-- -3'
miRNA:   3'- cCUUuCGGCGCCGg-----CAugUGCGGggu -5'
7000 5' -59.3 NC_001875.2 + 21494 0.67 0.690513
Target:  5'- ---uAGCUGCaGGCUGUgcuacacGCACGCCCa- -3'
miRNA:   3'- ccuuUCGGCG-CCGGCA-------UGUGCGGGgu -5'
7000 5' -59.3 NC_001875.2 + 74037 0.67 0.688526
Target:  5'- aGAuuGCCGCGcuaaaaaccgcGCUgcucggcguggauuGUGCGCGCCCCu -3'
miRNA:   3'- cCUuuCGGCGC-----------CGG--------------CAUGUGCGGGGu -5'
7000 5' -59.3 NC_001875.2 + 115774 0.67 0.68156
Target:  5'- ----cGCCGCGaGCCGUccucgaGCAauuCGUCCCAg -3'
miRNA:   3'- ccuuuCGGCGC-CGGCA------UGU---GCGGGGU- -5'
7000 5' -59.3 NC_001875.2 + 21097 0.67 0.68156
Target:  5'- cGGucGCCGCGcuuaaaCUGcACGCGCCCCGc -3'
miRNA:   3'- cCUuuCGGCGCc-----GGCaUGUGCGGGGU- -5'
7000 5' -59.3 NC_001875.2 + 54571 0.67 0.68156
Target:  5'- ----cGCCGCGGCggccgcuucgccCGgcgGCGCGCCCaCGg -3'
miRNA:   3'- ccuuuCGGCGCCG------------GCa--UGUGCGGG-GU- -5'
7000 5' -59.3 NC_001875.2 + 39990 0.67 0.68156
Target:  5'- uGggGGcCCGUGGCCG-ACugGUaCCAc -3'
miRNA:   3'- cCuuUC-GGCGCCGGCaUGugCGgGGU- -5'
7000 5' -59.3 NC_001875.2 + 55895 0.67 0.661558
Target:  5'- cGAuGGCCGCGGUCagcuuuuCGCGgCCCAc -3'
miRNA:   3'- cCUuUCGGCGCCGGcau----GUGCgGGGU- -5'
7000 5' -59.3 NC_001875.2 + 103449 0.67 0.661558
Target:  5'- ---uGGuCUGCGGCguCGUGCACGCCgCGa -3'
miRNA:   3'- ccuuUC-GGCGCCG--GCAUGUGCGGgGU- -5'
7000 5' -59.3 NC_001875.2 + 116637 0.67 0.661558
Target:  5'- ----uGCUGgGGCCGUacguGCugGCCaCCAu -3'
miRNA:   3'- ccuuuCGGCgCCGGCA----UGugCGG-GGU- -5'
7000 5' -59.3 NC_001875.2 + 122797 0.68 0.651518
Target:  5'- cGGAAAccGgCGCGGCCG-GCG-GCUCCAa -3'
miRNA:   3'- -CCUUU--CgGCGCCGGCaUGUgCGGGGU- -5'
7000 5' -59.3 NC_001875.2 + 70971 0.68 0.651518
Target:  5'- uGGAcGGCCG-GGCCGUcCACGagCCUg -3'
miRNA:   3'- -CCUuUCGGCgCCGGCAuGUGCg-GGGu -5'
7000 5' -59.3 NC_001875.2 + 76106 0.68 0.641464
Target:  5'- aGAGGGCCGCauggccacgcucGGCCGUauuuGCGCGgCCg- -3'
miRNA:   3'- cCUUUCGGCG------------CCGGCA----UGUGCgGGgu -5'
7000 5' -59.3 NC_001875.2 + 5122 0.68 0.640458
Target:  5'- cGGAAAGgucacguCCGCGGaCGUGCGcCGCUUCGg -3'
miRNA:   3'- -CCUUUC-------GGCGCCgGCAUGU-GCGGGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.