Results 1 - 20 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7001 | 3' | -55.2 | NC_001875.2 | + | 74936 | 0.66 | 0.923061 |
Target: 5'- aCGUGCUCaAGUGcCGGCccgaucgaauAGUGCCCu -3' miRNA: 3'- -GCAUGAGaUCGCcGCUGu---------UCACGGGc -5' |
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7001 | 3' | -55.2 | NC_001875.2 | + | 104960 | 0.68 | 0.839583 |
Target: 5'- -uUGCUCguguGCGGCGGCGggcuGGUGCaCGg -3' miRNA: 3'- gcAUGAGau--CGCCGCUGU----UCACGgGC- -5' |
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7001 | 3' | -55.2 | NC_001875.2 | + | 434 | 0.67 | 0.878317 |
Target: 5'- aGUACUCgAGCGuGCcgucgugcaccGGCGAGUGUUCGc -3' miRNA: 3'- gCAUGAGaUCGC-CG-----------CUGUUCACGGGC- -5' |
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7001 | 3' | -55.2 | NC_001875.2 | + | 81336 | 0.67 | 0.878317 |
Target: 5'- uCGUGC-CgcGCGGCGcGCuGGUGCCgCGc -3' miRNA: 3'- -GCAUGaGauCGCCGC-UGuUCACGG-GC- -5' |
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7001 | 3' | -55.2 | NC_001875.2 | + | 91925 | 0.67 | 0.885414 |
Target: 5'- --cACUCcaUGGCGGCGuACGAGUaaGCCUu -3' miRNA: 3'- gcaUGAG--AUCGCCGC-UGUUCA--CGGGc -5' |
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7001 | 3' | -55.2 | NC_001875.2 | + | 110395 | 0.67 | 0.892282 |
Target: 5'- uCGUGCgugCccGUGGaGAuCAAGUGCCCGu -3' miRNA: 3'- -GCAUGa--GauCGCCgCU-GUUCACGGGC- -5' |
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7001 | 3' | -55.2 | NC_001875.2 | + | 17794 | 0.66 | 0.911472 |
Target: 5'- uGUACaa-GGUGGCGACG-GUGCCg- -3' miRNA: 3'- gCAUGagaUCGCCGCUGUuCACGGgc -5' |
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7001 | 3' | -55.2 | NC_001875.2 | + | 54564 | 0.66 | 0.917388 |
Target: 5'- uGUACUgCgccGCGGCGGCcgcuucGCCCGg -3' miRNA: 3'- gCAUGA-Gau-CGCCGCUGuuca--CGGGC- -5' |
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7001 | 3' | -55.2 | NC_001875.2 | + | 39116 | 0.66 | 0.917388 |
Target: 5'- cCGcGCUCcaUGGCGGCGACGAcccUGaCCGg -3' miRNA: 3'- -GCaUGAG--AUCGCCGCUGUUc--ACgGGC- -5' |
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7001 | 3' | -55.2 | NC_001875.2 | + | 68836 | 0.68 | 0.837097 |
Target: 5'- gCGcUGC-CUGGCGGaCGggucgcacgcgugcGCGAGUGCCCc -3' miRNA: 3'- -GC-AUGaGAUCGCC-GC--------------UGUUCACGGGc -5' |
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7001 | 3' | -55.2 | NC_001875.2 | + | 8782 | 0.68 | 0.813977 |
Target: 5'- cCGUGCU-UGGUGGCaaACAAGcUGCCCa -3' miRNA: 3'- -GCAUGAgAUCGCCGc-UGUUC-ACGGGc -5' |
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7001 | 3' | -55.2 | NC_001875.2 | + | 84406 | 0.68 | 0.813977 |
Target: 5'- --aGCUUcGGCGGCGGCGcguauaGGUGCCa- -3' miRNA: 3'- gcaUGAGaUCGCCGCUGU------UCACGGgc -5' |
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7001 | 3' | -55.2 | NC_001875.2 | + | 48383 | 0.72 | 0.63712 |
Target: 5'- cCGUcCgac-GCGGCGACAGGUGCCgGc -3' miRNA: 3'- -GCAuGagauCGCCGCUGUUCACGGgC- -5' |
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7001 | 3' | -55.2 | NC_001875.2 | + | 9938 | 0.7 | 0.738931 |
Target: 5'- aGUAUUCUAGCGGUG-C---UGCCCa -3' miRNA: 3'- gCAUGAGAUCGCCGCuGuucACGGGc -5' |
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7001 | 3' | -55.2 | NC_001875.2 | + | 23831 | 0.69 | 0.758452 |
Target: 5'- cCGUGuCUCUGGCgGGUGGgguuaAAGUGCUCGc -3' miRNA: 3'- -GCAU-GAGAUCG-CCGCUg----UUCACGGGC- -5' |
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7001 | 3' | -55.2 | NC_001875.2 | + | 50023 | 0.69 | 0.758452 |
Target: 5'- gCGUGgUCgccgGGCGGCGAgGcGgccgGCCCGu -3' miRNA: 3'- -GCAUgAGa---UCGCCGCUgUuCa---CGGGC- -5' |
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7001 | 3' | -55.2 | NC_001875.2 | + | 47388 | 0.69 | 0.768047 |
Target: 5'- uGUuuUC-GGCGGaCGGCGAGUGCCUu -3' miRNA: 3'- gCAugAGaUCGCC-GCUGUUCACGGGc -5' |
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7001 | 3' | -55.2 | NC_001875.2 | + | 103115 | 0.69 | 0.768047 |
Target: 5'- uCGUgGCUCgcuUGGCGGCGGC-GGcGCCCu -3' miRNA: 3'- -GCA-UGAG---AUCGCCGCUGuUCaCGGGc -5' |
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7001 | 3' | -55.2 | NC_001875.2 | + | 113326 | 0.69 | 0.777517 |
Target: 5'- gCGUACUCUucaaGGaacgaGGCGACGAuUGCCUc -3' miRNA: 3'- -GCAUGAGA----UCg----CCGCUGUUcACGGGc -5' |
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7001 | 3' | -55.2 | NC_001875.2 | + | 114674 | 0.69 | 0.777517 |
Target: 5'- gGUGCgUC-AGCGGCGACcgugcuuuucGGGUGCCa- -3' miRNA: 3'- gCAUG-AGaUCGCCGCUG----------UUCACGGgc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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