Results 21 - 36 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7001 | 3' | -55.2 | NC_001875.2 | + | 114674 | 0.69 | 0.777517 |
Target: 5'- gGUGCgUC-AGCGGCGACcgugcuuuucGGGUGCCa- -3' miRNA: 3'- gCAUG-AGaUCGCCGCUG----------UUCACGGgc -5' |
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7001 | 3' | -55.2 | NC_001875.2 | + | 113326 | 0.69 | 0.777517 |
Target: 5'- gCGUACUCUucaaGGaacgaGGCGACGAuUGCCUc -3' miRNA: 3'- -GCAUGAGA----UCg----CCGCUGUUcACGGGc -5' |
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7001 | 3' | -55.2 | NC_001875.2 | + | 47388 | 0.69 | 0.768047 |
Target: 5'- uGUuuUC-GGCGGaCGGCGAGUGCCUu -3' miRNA: 3'- gCAugAGaUCGCC-GCUGUUCACGGGc -5' |
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7001 | 3' | -55.2 | NC_001875.2 | + | 103115 | 0.69 | 0.768047 |
Target: 5'- uCGUgGCUCgcuUGGCGGCGGC-GGcGCCCu -3' miRNA: 3'- -GCA-UGAG---AUCGCCGCUGuUCaCGGGc -5' |
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7001 | 3' | -55.2 | NC_001875.2 | + | 50023 | 0.69 | 0.758452 |
Target: 5'- gCGUGgUCgccgGGCGGCGAgGcGgccgGCCCGu -3' miRNA: 3'- -GCAUgAGa---UCGCCGCUgUuCa---CGGGC- -5' |
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7001 | 3' | -55.2 | NC_001875.2 | + | 23831 | 0.69 | 0.758452 |
Target: 5'- cCGUGuCUCUGGCgGGUGGgguuaAAGUGCUCGc -3' miRNA: 3'- -GCAU-GAGAUCG-CCGCUg----UUCACGGGC- -5' |
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7001 | 3' | -55.2 | NC_001875.2 | + | 9938 | 0.7 | 0.738931 |
Target: 5'- aGUAUUCUAGCGGUG-C---UGCCCa -3' miRNA: 3'- gCAUGAGAUCGCCGCuGuucACGGGc -5' |
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7001 | 3' | -55.2 | NC_001875.2 | + | 129920 | 0.71 | 0.698822 |
Target: 5'- gCGUugUUaauUGGCGGCGGCA--UGCUCGu -3' miRNA: 3'- -GCAugAG---AUCGCCGCUGUucACGGGC- -5' |
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7001 | 3' | -55.2 | NC_001875.2 | + | 57681 | 0.71 | 0.698822 |
Target: 5'- gCGUcCaagCUGGCGGCGGCGGGcGCCgCGc -3' miRNA: 3'- -GCAuGa--GAUCGCCGCUGUUCaCGG-GC- -5' |
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7001 | 3' | -55.2 | NC_001875.2 | + | 44100 | 0.71 | 0.657795 |
Target: 5'- uGUucGCUCacaGGUGGCGGCGAGuUGUCCGc -3' miRNA: 3'- gCA--UGAGa--UCGCCGCUGUUC-ACGGGC- -5' |
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7001 | 3' | -55.2 | NC_001875.2 | + | 69264 | 0.71 | 0.657795 |
Target: 5'- cCGcgGCUCgagccgUGGCGGCGGCAAGUccaCCCGc -3' miRNA: 3'- -GCa-UGAG------AUCGCCGCUGUUCAc--GGGC- -5' |
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7001 | 3' | -55.2 | NC_001875.2 | + | 48383 | 0.72 | 0.63712 |
Target: 5'- cCGUcCgac-GCGGCGACAGGUGCCgGc -3' miRNA: 3'- -GCAuGagauCGCCGCUGUUCACGGgC- -5' |
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7001 | 3' | -55.2 | NC_001875.2 | + | 86691 | 0.72 | 0.595785 |
Target: 5'- aCGUAC-CUGGCcaguaGCGGCAAGUggcGCCCGc -3' miRNA: 3'- -GCAUGaGAUCGc----CGCUGUUCA---CGGGC- -5' |
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7001 | 3' | -55.2 | NC_001875.2 | + | 98739 | 0.73 | 0.585501 |
Target: 5'- aGUGCUaCUuuGCGuuagaCGGCAAGUGCCCGa -3' miRNA: 3'- gCAUGA-GAu-CGCc----GCUGUUCACGGGC- -5' |
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7001 | 3' | -55.2 | NC_001875.2 | + | 111140 | 0.75 | 0.447889 |
Target: 5'- aCGUACgUUGGCGGCGGCuuGGUGUCaCGg -3' miRNA: 3'- -GCAUGaGAUCGCCGCUGu-UCACGG-GC- -5' |
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7001 | 3' | -55.2 | NC_001875.2 | + | 102982 | 1.08 | 0.003447 |
Target: 5'- gCGUACUCUAGCGGCGACAAGUGCCCGc -3' miRNA: 3'- -GCAUGAGAUCGCCGCUGUUCACGGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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