Results 1 - 20 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7001 | 5' | -61.9 | NC_001875.2 | + | 103016 | 1.06 | 0.001186 |
Target: 5'- uGUCGGCCACCCUGACGGUCACCGGCUc -3' miRNA: 3'- -CAGCCGGUGGGACUGCCAGUGGCCGA- -5' |
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7001 | 5' | -61.9 | NC_001875.2 | + | 45184 | 0.76 | 0.171683 |
Target: 5'- uGUCGGCCGCCCUGACcacgcucgauucggGGcuUCAagaCGGCUg -3' miRNA: 3'- -CAGCCGGUGGGACUG--------------CC--AGUg--GCCGA- -5' |
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7001 | 5' | -61.9 | NC_001875.2 | + | 102018 | 0.71 | 0.339964 |
Target: 5'- cGUCGGCCguGCCCgaGAaauauuuGUCGCCGGCg -3' miRNA: 3'- -CAGCCGG--UGGGa-CUgc-----CAGUGGCCGa -5' |
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7001 | 5' | -61.9 | NC_001875.2 | + | 114492 | 0.71 | 0.347425 |
Target: 5'- -gCGGCagCACUCUGacGCGGUCGCgCGGCg -3' miRNA: 3'- caGCCG--GUGGGAC--UGCCAGUG-GCCGa -5' |
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7001 | 5' | -61.9 | NC_001875.2 | + | 65435 | 0.7 | 0.370506 |
Target: 5'- -cCGGCgugCACCgCUGGCGGUCGgUGGCc -3' miRNA: 3'- caGCCG---GUGG-GACUGCCAGUgGCCGa -5' |
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7001 | 5' | -61.9 | NC_001875.2 | + | 115872 | 0.7 | 0.378428 |
Target: 5'- -gCGGCCGCUCUGgccgggcaggauGCGGUCaaaguGCUGGCg -3' miRNA: 3'- caGCCGGUGGGAC------------UGCCAG-----UGGCCGa -5' |
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7001 | 5' | -61.9 | NC_001875.2 | + | 121192 | 0.7 | 0.387274 |
Target: 5'- aGUCcGCCGCCCaaguacugcacgcugGGCGG-CACCGGCc -3' miRNA: 3'- -CAGcCGGUGGGa--------------CUGCCaGUGGCCGa -5' |
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7001 | 5' | -61.9 | NC_001875.2 | + | 33551 | 0.69 | 0.411236 |
Target: 5'- cGUUGGCCACagUG-CGGUCGCCgcggGGCa -3' miRNA: 3'- -CAGCCGGUGggACuGCCAGUGG----CCGa -5' |
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7001 | 5' | -61.9 | NC_001875.2 | + | 19949 | 0.69 | 0.428288 |
Target: 5'- -gCGGCCGgCgC-GACGGUCcgGCCGGCg -3' miRNA: 3'- caGCCGGUgG-GaCUGCCAG--UGGCCGa -5' |
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7001 | 5' | -61.9 | NC_001875.2 | + | 18174 | 0.68 | 0.463603 |
Target: 5'- -aCGccGCCACUgUGGCGGU-GCCGGCg -3' miRNA: 3'- caGC--CGGUGGgACUGCCAgUGGCCGa -5' |
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7001 | 5' | -61.9 | NC_001875.2 | + | 63716 | 0.68 | 0.491062 |
Target: 5'- uGUCGGUCGCggcGACGGcgggcgcuUCGCCGGCg -3' miRNA: 3'- -CAGCCGGUGggaCUGCC--------AGUGGCCGa -5' |
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7001 | 5' | -61.9 | NC_001875.2 | + | 102906 | 0.68 | 0.508838 |
Target: 5'- -gCGGCCGgCCguugaagcggaggUGGCGGaUgACCGGCUg -3' miRNA: 3'- caGCCGGUgGG-------------ACUGCC-AgUGGCCGA- -5' |
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7001 | 5' | -61.9 | NC_001875.2 | + | 92033 | 0.68 | 0.519252 |
Target: 5'- aGUCGGCCGCC--GACGucCACgGGCUg -3' miRNA: 3'- -CAGCCGGUGGgaCUGCcaGUGgCCGA- -5' |
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7001 | 5' | -61.9 | NC_001875.2 | + | 124705 | 0.67 | 0.527834 |
Target: 5'- uUCGGCCaacgcGCCUggcaagcggcgcgUGGCGGUCAaugUCGGCa -3' miRNA: 3'- cAGCCGG-----UGGG-------------ACUGCCAGU---GGCCGa -5' |
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7001 | 5' | -61.9 | NC_001875.2 | + | 114976 | 0.67 | 0.557774 |
Target: 5'- -gCGGUCGCgCUGGCGG-CGCCgauuaacacGGCUa -3' miRNA: 3'- caGCCGGUGgGACUGCCaGUGG---------CCGA- -5' |
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7001 | 5' | -61.9 | NC_001875.2 | + | 54003 | 0.67 | 0.557774 |
Target: 5'- gGUCGcGCacgGCCUUGGCGGcgcgcgcgUACCGGCa -3' miRNA: 3'- -CAGC-CGg--UGGGACUGCCa-------GUGGCCGa -5' |
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7001 | 5' | -61.9 | NC_001875.2 | + | 91856 | 0.67 | 0.5744 |
Target: 5'- aGUCGGCCACgggcccccagggcgCCUGcUGGUgCGgCGGCg -3' miRNA: 3'- -CAGCCGGUG--------------GGACuGCCA-GUgGCCGa -5' |
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7001 | 5' | -61.9 | NC_001875.2 | + | 40087 | 0.67 | 0.577347 |
Target: 5'- --aGGCCGCggcgCUGACGcGcCACUGGCUg -3' miRNA: 3'- cagCCGGUGg---GACUGC-CaGUGGCCGA- -5' |
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7001 | 5' | -61.9 | NC_001875.2 | + | 7053 | 0.67 | 0.577347 |
Target: 5'- uGUCGGCCugguuCCgCUG-CGGcgacgcCACCGGCc -3' miRNA: 3'- -CAGCCGGu----GG-GACuGCCa-----GUGGCCGa -5' |
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7001 | 5' | -61.9 | NC_001875.2 | + | 14463 | 0.66 | 0.591138 |
Target: 5'- -gCGGCCAgcaagcucggcgccuCCCcGACGGcCAgCCGGCc -3' miRNA: 3'- caGCCGGU---------------GGGaCUGCCaGU-GGCCGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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