Results 21 - 33 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7002 | 3' | -59.8 | NC_001875.2 | + | 101889 | 0.68 | 0.539952 |
Target: 5'- cGCCCCUcucuuuguuaaaaACGuAGGCCGCUuuAGCGGCg-- -3' miRNA: 3'- -UGGGGA-------------UGC-UCUGGCGG--UUGCCGguu -5' |
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7002 | 3' | -59.8 | NC_001875.2 | + | 98030 | 0.69 | 0.531086 |
Target: 5'- uCCCCcGCGcgccGugCGCCGACGGgCAAg -3' miRNA: 3'- uGGGGaUGCu---CugGCGGUUGCCgGUU- -5' |
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7002 | 3' | -59.8 | NC_001875.2 | + | 49134 | 0.69 | 0.531086 |
Target: 5'- uGCCCCUGCGcGACUGgCGGCGcuaCCAGg -3' miRNA: 3'- -UGGGGAUGCuCUGGCgGUUGCc--GGUU- -5' |
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7002 | 3' | -59.8 | NC_001875.2 | + | 102571 | 0.69 | 0.501939 |
Target: 5'- cGCCCCgcCGGcGCgGUCGGCGGCCGc -3' miRNA: 3'- -UGGGGauGCUcUGgCGGUUGCCGGUu -5' |
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7002 | 3' | -59.8 | NC_001875.2 | + | 86930 | 0.69 | 0.501939 |
Target: 5'- cGCCgCCUagagugcgaggGCGAG-CCGCCAGCGuCCAAg -3' miRNA: 3'- -UGG-GGA-----------UGCUCuGGCGGUUGCcGGUU- -5' |
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7002 | 3' | -59.8 | NC_001875.2 | + | 90690 | 0.69 | 0.501939 |
Target: 5'- gACCUCgacgAUGGGGuuGCCGgcGCGGCCGc -3' miRNA: 3'- -UGGGGa---UGCUCUggCGGU--UGCCGGUu -5' |
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7002 | 3' | -59.8 | NC_001875.2 | + | 67685 | 0.7 | 0.445923 |
Target: 5'- aGCUCCUugGAcugacGACaugGCCGGCGGCCu- -3' miRNA: 3'- -UGGGGAugCU-----CUGg--CGGUUGCCGGuu -5' |
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7002 | 3' | -59.8 | NC_001875.2 | + | 98285 | 0.71 | 0.39357 |
Target: 5'- uGCCCC-GCGGcGACCGCaCugUGGCCAAc -3' miRNA: 3'- -UGGGGaUGCU-CUGGCG-GuuGCCGGUU- -5' |
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7002 | 3' | -59.8 | NC_001875.2 | + | 110083 | 0.71 | 0.377026 |
Target: 5'- -aCgCUGCgcgugGAGGCCGCCAcgcGCGGCCAGa -3' miRNA: 3'- ugGgGAUG-----CUCUGGCGGU---UGCCGGUU- -5' |
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7002 | 3' | -59.8 | NC_001875.2 | + | 55711 | 0.72 | 0.368931 |
Target: 5'- gGCCUCUACG--GCCGCgCAaauACGGCCGAg -3' miRNA: 3'- -UGGGGAUGCucUGGCG-GU---UGCCGGUU- -5' |
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7002 | 3' | -59.8 | NC_001875.2 | + | 89665 | 0.72 | 0.337007 |
Target: 5'- cGCCCaaccgcgcgucguUUACGuuuGACCGCgCGACGGCCGAc -3' miRNA: 3'- -UGGG-------------GAUGCu--CUGGCG-GUUGCCGGUU- -5' |
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7002 | 3' | -59.8 | NC_001875.2 | + | 94222 | 0.74 | 0.256011 |
Target: 5'- aGCCCCaugucgucgGCGAGcacGCCGCCGuGCGGCCGg -3' miRNA: 3'- -UGGGGa--------UGCUC---UGGCGGU-UGCCGGUu -5' |
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7002 | 3' | -59.8 | NC_001875.2 | + | 104017 | 1.05 | 0.001872 |
Target: 5'- uACCCCUACGAGACCGCCAACGGCCAAu -3' miRNA: 3'- -UGGGGAUGCUCUGGCGGUUGCCGGUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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