miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7002 5' -52.2 NC_001875.2 + 116855 0.66 0.971645
Target:  5'- aCCgCCAAUCGuugUGcUGGagCGGCGUUGu -3'
miRNA:   3'- -GG-GGUUGGCuaaAC-ACCa-GCCGCAAU- -5'
7002 5' -52.2 NC_001875.2 + 85280 0.66 0.971645
Target:  5'- gCCCCGAacaCGGUUUGcgcgGG-CGGCGc-- -3'
miRNA:   3'- -GGGGUUg--GCUAAACa---CCaGCCGCaau -5'
7002 5' -52.2 NC_001875.2 + 15737 0.67 0.968637
Target:  5'- aCCCCAACgCGGUcuacuuuuUUGUGGgggagGGCGa-- -3'
miRNA:   3'- -GGGGUUG-GCUA--------AACACCag---CCGCaau -5'
7002 5' -52.2 NC_001875.2 + 102572 0.67 0.961956
Target:  5'- gCCCC-GCCGGc--GcGGUCGGCGg-- -3'
miRNA:   3'- -GGGGuUGGCUaaaCaCCAGCCGCaau -5'
7002 5' -52.2 NC_001875.2 + 55920 0.67 0.958269
Target:  5'- gCCCAcCCGcgUaaUGUGGUUGGCc--- -3'
miRNA:   3'- gGGGUuGGCuaA--ACACCAGCCGcaau -5'
7002 5' -52.2 NC_001875.2 + 31992 0.67 0.954345
Target:  5'- --aCGGCCGGUUUGUGaG-CGGCGg-- -3'
miRNA:   3'- gggGUUGGCUAAACAC-CaGCCGCaau -5'
7002 5' -52.2 NC_001875.2 + 86649 0.68 0.945767
Target:  5'- gCCCCgAAUCGAgc-GUGGUCagGGCGg-- -3'
miRNA:   3'- -GGGG-UUGGCUaaaCACCAG--CCGCaau -5'
7002 5' -52.2 NC_001875.2 + 85337 0.68 0.931026
Target:  5'- gCCCCGcccgccgcgaacGCCGAcgccGUGG-CGGCGUUc -3'
miRNA:   3'- -GGGGU------------UGGCUaaa-CACCaGCCGCAAu -5'
7002 5' -52.2 NC_001875.2 + 97758 0.69 0.91993
Target:  5'- aCCCCGGCaCGGgcgUGUGGcugUUGGCGc-- -3'
miRNA:   3'- -GGGGUUG-GCUaa-ACACC---AGCCGCaau -5'
7002 5' -52.2 NC_001875.2 + 60474 0.69 0.90782
Target:  5'- gCCCCAGCaaauucaUUGUGcuagcGUCGGCGUUGu -3'
miRNA:   3'- -GGGGUUGgcua---AACAC-----CAGCCGCAAU- -5'
7002 5' -52.2 NC_001875.2 + 41024 0.69 0.901388
Target:  5'- uCgCCAACCGcgUggccGUGGaCGGCGUUu -3'
miRNA:   3'- -GgGGUUGGCuaAa---CACCaGCCGCAAu -5'
7002 5' -52.2 NC_001875.2 + 42566 0.69 0.901388
Target:  5'- gCCCAGCCGcgcca-GGUCGGCGc-- -3'
miRNA:   3'- gGGGUUGGCuaaacaCCAGCCGCaau -5'
7002 5' -52.2 NC_001875.2 + 39630 0.69 0.894709
Target:  5'- gCCCCGGCaguCGAcg-GUGG-CGGCGUUu -3'
miRNA:   3'- -GGGGUUG---GCUaaaCACCaGCCGCAAu -5'
7002 5' -52.2 NC_001875.2 + 93816 0.71 0.841393
Target:  5'- gUCCCAguGCCGG-UUGUGGaUgGGCGUg- -3'
miRNA:   3'- -GGGGU--UGGCUaAACACC-AgCCGCAau -5'
7002 5' -52.2 NC_001875.2 + 49889 0.73 0.728786
Target:  5'- gUCCAGCaCGAggUGUGGUCcGGCGa-- -3'
miRNA:   3'- gGGGUUG-GCUaaACACCAG-CCGCaau -5'
7002 5' -52.2 NC_001875.2 + 104054 1.1 0.005264
Target:  5'- aCCCCAACCGAUUUGUGGUCGGCGUUAg -3'
miRNA:   3'- -GGGGUUGGCUAAACACCAGCCGCAAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.