miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7003 3' -49.7 NC_001875.2 + 22032 0.66 0.994389
Target:  5'- -cAGACGCGUUCGACAauaUGuUCAGa-- -3'
miRNA:   3'- uaUCUGCGCAGGCUGUa--AC-AGUUgau -5'
7003 3' -49.7 NC_001875.2 + 3228 0.66 0.994389
Target:  5'- cGUGGGCGCGU-UGGCGUUGUuggacCGGCUc -3'
miRNA:   3'- -UAUCUGCGCAgGCUGUAACA-----GUUGAu -5'
7003 3' -49.7 NC_001875.2 + 77500 0.66 0.993469
Target:  5'- -cGGGCGCGUCCaacGACGUgaccGUCAcGCg- -3'
miRNA:   3'- uaUCUGCGCAGG---CUGUAa---CAGU-UGau -5'
7003 3' -49.7 NC_001875.2 + 3412 0.66 0.993469
Target:  5'- -aGGAguUGCGUCCGGCugcgGUUAGCa- -3'
miRNA:   3'- uaUCU--GCGCAGGCUGuaa-CAGUUGau -5'
7003 3' -49.7 NC_001875.2 + 67463 0.66 0.992432
Target:  5'- cUGGGCGCG-CUGGCcgUGuUCAGCc- -3'
miRNA:   3'- uAUCUGCGCaGGCUGuaAC-AGUUGau -5'
7003 3' -49.7 NC_001875.2 + 68895 0.67 0.989967
Target:  5'- --cGcCGCGUCCGGCGagUGUCGAg-- -3'
miRNA:   3'- uauCuGCGCAGGCUGUa-ACAGUUgau -5'
7003 3' -49.7 NC_001875.2 + 7178 0.67 0.986913
Target:  5'- cUGGACGCGaucgCCGACAUUccgagCGACg- -3'
miRNA:   3'- uAUCUGCGCa---GGCUGUAAca---GUUGau -5'
7003 3' -49.7 NC_001875.2 + 79823 0.67 0.98319
Target:  5'- --uGACGCGcacgUCCGACAcugcgUGcUCAGCUGg -3'
miRNA:   3'- uauCUGCGC----AGGCUGUa----AC-AGUUGAU- -5'
7003 3' -49.7 NC_001875.2 + 21273 0.68 0.976178
Target:  5'- --cGGCGCGgcuacgagCaCGACAUUgGUCAGCUGg -3'
miRNA:   3'- uauCUGCGCa-------G-GCUGUAA-CAGUUGAU- -5'
7003 3' -49.7 NC_001875.2 + 68437 0.68 0.976178
Target:  5'- --uGACGUGUacgaccacaCGuACAUUGUCAGCUGg -3'
miRNA:   3'- uauCUGCGCAg--------GC-UGUAACAGUUGAU- -5'
7003 3' -49.7 NC_001875.2 + 73483 0.68 0.973421
Target:  5'- --cGACGCGUCCGACGagcaUGgCGACc- -3'
miRNA:   3'- uauCUGCGCAGGCUGUa---ACaGUUGau -5'
7003 3' -49.7 NC_001875.2 + 7720 0.69 0.967229
Target:  5'- cGUGaACGCGUCgGACAUUGacgcCGACUGc -3'
miRNA:   3'- -UAUcUGCGCAGgCUGUAACa---GUUGAU- -5'
7003 3' -49.7 NC_001875.2 + 91257 0.7 0.937706
Target:  5'- cGUAGuACGaGUCCGACAgcuugGUCAACa- -3'
miRNA:   3'- -UAUC-UGCgCAGGCUGUaa---CAGUUGau -5'
7003 3' -49.7 NC_001875.2 + 58091 0.7 0.932429
Target:  5'- --uGGCGCGUgCGcACGUUGUUAGCg- -3'
miRNA:   3'- uauCUGCGCAgGC-UGUAACAGUUGau -5'
7003 3' -49.7 NC_001875.2 + 76407 0.7 0.932429
Target:  5'- cUGGACGCGUUCGGCAUUaccaagccGUUGACc- -3'
miRNA:   3'- uAUCUGCGCAGGCUGUAA--------CAGUUGau -5'
7003 3' -49.7 NC_001875.2 + 60383 0.7 0.926878
Target:  5'- -cGGAgCGCGUCCG-CAUUGUgAAUUGc -3'
miRNA:   3'- uaUCU-GCGCAGGCuGUAACAgUUGAU- -5'
7003 3' -49.7 NC_001875.2 + 93901 0.71 0.901955
Target:  5'- -aAGAuCGCGUUagaCGACAUUGUCAAUa- -3'
miRNA:   3'- uaUCU-GCGCAG---GCUGUAACAGUUGau -5'
7003 3' -49.7 NC_001875.2 + 15345 0.73 0.848314
Target:  5'- --cGACgGCGUCUGACGacGUCAACUGu -3'
miRNA:   3'- uauCUG-CGCAGGCUGUaaCAGUUGAU- -5'
7003 3' -49.7 NC_001875.2 + 104160 1.05 0.014704
Target:  5'- gAUAGACGCGUCCGACAUUGUCAACUAu -3'
miRNA:   3'- -UAUCUGCGCAGGCUGUAACAGUUGAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.