miRNA display CGI


Results 21 - 40 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7003 5' -49.7 NC_001875.2 + 52334 0.66 0.993777
Target:  5'- cAUUGUGC-ACAAUuucaagugcgGCGCGuGCCGCGc -3'
miRNA:   3'- -UAAUACGcUGUUA----------CGCGCuUGGUGCc -5'
7003 5' -49.7 NC_001875.2 + 89504 0.66 0.993777
Target:  5'- ---cUGCGAC--UGCGCuuccGCCugGGg -3'
miRNA:   3'- uaauACGCUGuuACGCGcu--UGGugCC- -5'
7003 5' -49.7 NC_001875.2 + 131256 0.66 0.993777
Target:  5'- --aGUGCGGCAGuUGUGCGA--CGCGu -3'
miRNA:   3'- uaaUACGCUGUU-ACGCGCUugGUGCc -5'
7003 5' -49.7 NC_001875.2 + 81337 0.66 0.993777
Target:  5'- --cGUGCcGCGcgGCGCGcugguGCCGCGc -3'
miRNA:   3'- uaaUACGcUGUuaCGCGCu----UGGUGCc -5'
7003 5' -49.7 NC_001875.2 + 128953 0.66 0.993777
Target:  5'- ----aGCGGCuaagGCGUGAGCUgggcgaGCGGa -3'
miRNA:   3'- uaauaCGCUGuua-CGCGCUUGG------UGCC- -5'
7003 5' -49.7 NC_001875.2 + 68566 0.66 0.993777
Target:  5'- ----gGCGGCGGU-CGCGcACCGCGu -3'
miRNA:   3'- uaauaCGCUGUUAcGCGCuUGGUGCc -5'
7003 5' -49.7 NC_001875.2 + 118029 0.67 0.992791
Target:  5'- ----cGCGAcCAGUGCGaCGGcaacGCCGCGc -3'
miRNA:   3'- uaauaCGCU-GUUACGC-GCU----UGGUGCc -5'
7003 5' -49.7 NC_001875.2 + 7087 0.67 0.992791
Target:  5'- ----gGCGGCAgcuacuacGUGCGCGGcucggACgGCGGc -3'
miRNA:   3'- uaauaCGCUGU--------UACGCGCU-----UGgUGCC- -5'
7003 5' -49.7 NC_001875.2 + 14721 0.67 0.992791
Target:  5'- ----aGUGACAAcgaGCGCGAgGCCAUGa -3'
miRNA:   3'- uaauaCGCUGUUa--CGCGCU-UGGUGCc -5'
7003 5' -49.7 NC_001875.2 + 125764 0.67 0.992791
Target:  5'- uAUUAcgGCGACAAcgaggccaugcUGCGCuuuaucgaGAACCACGc -3'
miRNA:   3'- -UAAUa-CGCUGUU-----------ACGCG--------CUUGGUGCc -5'
7003 5' -49.7 NC_001875.2 + 50485 0.67 0.992791
Target:  5'- ----cGCGGCcg-GCGCGuGCgCGCGGc -3'
miRNA:   3'- uaauaCGCUGuuaCGCGCuUG-GUGCC- -5'
7003 5' -49.7 NC_001875.2 + 77628 0.67 0.992473
Target:  5'- -aUcgGCGGCAacggcucgggucugGUGC-CGAACC-CGGg -3'
miRNA:   3'- uaAuaCGCUGU--------------UACGcGCUUGGuGCC- -5'
7003 5' -49.7 NC_001875.2 + 116877 0.67 0.992142
Target:  5'- uGUUggGCGACGGcacaaacucuucgucUGCGCuAGCCGCGc -3'
miRNA:   3'- -UAAuaCGCUGUU---------------ACGCGcUUGGUGCc -5'
7003 5' -49.7 NC_001875.2 + 64944 0.67 0.991685
Target:  5'- cAUUAUGCaaaacACGAUGgcgcCGCGAauuagGCCGCGGu -3'
miRNA:   3'- -UAAUACGc----UGUUAC----GCGCU-----UGGUGCC- -5'
7003 5' -49.7 NC_001875.2 + 113601 0.67 0.991685
Target:  5'- ----gGCGuuCGAgucgGCgGCGGGCCGCGGc -3'
miRNA:   3'- uaauaCGCu-GUUa---CG-CGCUUGGUGCC- -5'
7003 5' -49.7 NC_001875.2 + 97657 0.67 0.991685
Target:  5'- --gGUGCa--AAUGCGCGAcGCCgACGGc -3'
miRNA:   3'- uaaUACGcugUUACGCGCU-UGG-UGCC- -5'
7003 5' -49.7 NC_001875.2 + 29400 0.67 0.991685
Target:  5'- ----gGCGGCAAggGCGCcAACC-CGGc -3'
miRNA:   3'- uaauaCGCUGUUa-CGCGcUUGGuGCC- -5'
7003 5' -49.7 NC_001875.2 + 62223 0.67 0.991685
Target:  5'- ----cGCGACGAUGgacaggguggaCGCGcGCCGCGu -3'
miRNA:   3'- uaauaCGCUGUUAC-----------GCGCuUGGUGCc -5'
7003 5' -49.7 NC_001875.2 + 105525 0.67 0.991567
Target:  5'- ----gGCGACAcgGCucgucGCGAAauuggcgugacgcCCACGGg -3'
miRNA:   3'- uaauaCGCUGUuaCG-----CGCUU-------------GGUGCC- -5'
7003 5' -49.7 NC_001875.2 + 90035 0.67 0.990448
Target:  5'- ----cGCGGCGccgGCGCGcguGCCgGCGGa -3'
miRNA:   3'- uaauaCGCUGUua-CGCGCu--UGG-UGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.