miRNA display CGI


Results 1 - 20 of 198 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7004 3' -52.9 NC_001875.2 + 425 0.65 0.96742
Target:  5'- ---cAGCUGCgcuUGCAuguCCGCCAauguggucugcagcGCGGUg -3'
miRNA:   3'- gaacUCGAUG---ACGUu--GGCGGU--------------UGCCG- -5'
7004 3' -52.9 NC_001875.2 + 1780 0.65 0.967097
Target:  5'- --cGAGCaUGCcGCcGCCGCCGccgccauuuccguCGGCg -3'
miRNA:   3'- gaaCUCG-AUGaCGuUGGCGGUu------------GCCG- -5'
7004 3' -52.9 NC_001875.2 + 86184 0.66 0.966444
Target:  5'- uUUGAcGC-GCUGUAcgcaaaacuagaggcGCCGCCGcacaacuuGCGGCu -3'
miRNA:   3'- gAACU-CGaUGACGU---------------UGGCGGU--------UGCCG- -5'
7004 3' -52.9 NC_001875.2 + 98742 0.66 0.965112
Target:  5'- -gUGGuGCgUGCU-CAGCCGC-GACGGCg -3'
miRNA:   3'- gaACU-CG-AUGAcGUUGGCGgUUGCCG- -5'
7004 3' -52.9 NC_001875.2 + 39105 0.66 0.965112
Target:  5'- --cGcGCUGCUGCAcCgGUUAGCuGGCg -3'
miRNA:   3'- gaaCuCGAUGACGUuGgCGGUUG-CCG- -5'
7004 3' -52.9 NC_001875.2 + 108999 0.66 0.965112
Target:  5'- ---aGGCUGgacGCGuacgucguGCCGCCGACGGUg -3'
miRNA:   3'- gaacUCGAUga-CGU--------UGGCGGUUGCCG- -5'
7004 3' -52.9 NC_001875.2 + 98966 0.66 0.965112
Target:  5'- uUUGcAGC-GCUGCAGCgaaCGCUacuuuuggccgGACGGCa -3'
miRNA:   3'- gAAC-UCGaUGACGUUG---GCGG-----------UUGCCG- -5'
7004 3' -52.9 NC_001875.2 + 8247 0.66 0.965112
Target:  5'- uUUGGGCaGCcgGCGAaucuugugcCCGCCGuUGGCa -3'
miRNA:   3'- gAACUCGaUGa-CGUU---------GGCGGUuGCCG- -5'
7004 3' -52.9 NC_001875.2 + 22819 0.66 0.965112
Target:  5'- --cGuGCgguccgACgGC-ACCGUCGGCGGCa -3'
miRNA:   3'- gaaCuCGa-----UGaCGuUGGCGGUUGCCG- -5'
7004 3' -52.9 NC_001875.2 + 26782 0.66 0.965112
Target:  5'- gUUGAGCgAC-GC-GCCGUCGAgGGUg -3'
miRNA:   3'- gAACUCGaUGaCGuUGGCGGUUgCCG- -5'
7004 3' -52.9 NC_001875.2 + 14410 0.66 0.965112
Target:  5'- --gGAGCgUAUggGCGccACCGgCAugGGCg -3'
miRNA:   3'- gaaCUCG-AUGa-CGU--UGGCgGUugCCG- -5'
7004 3' -52.9 NC_001875.2 + 121429 0.66 0.965112
Target:  5'- gUUGGGUagUGCaGCGgguGCCGCgCcACGGCg -3'
miRNA:   3'- gAACUCG--AUGaCGU---UGGCG-GuUGCCG- -5'
7004 3' -52.9 NC_001875.2 + 128179 0.66 0.965112
Target:  5'- gUUGGcGCgcaaGCgcGCAGCacacaCGCCAGCGGCu -3'
miRNA:   3'- gAACU-CGa---UGa-CGUUG-----GCGGUUGCCG- -5'
7004 3' -52.9 NC_001875.2 + 21669 0.66 0.965112
Target:  5'- --cGAGCgcAgUGCGacGCCGCCcGACGaGCg -3'
miRNA:   3'- gaaCUCGa-UgACGU--UGGCGG-UUGC-CG- -5'
7004 3' -52.9 NC_001875.2 + 71988 0.66 0.965112
Target:  5'- gCUUGcacGCgucGCUGUAGUCGCCG-CGGCu -3'
miRNA:   3'- -GAACu--CGa--UGACGUUGGCGGUuGCCG- -5'
7004 3' -52.9 NC_001875.2 + 14038 0.66 0.963044
Target:  5'- -cUGGGCgcugaaUGCGcucgucaacuuuugcGUCGCCAACGGCg -3'
miRNA:   3'- gaACUCGaug---ACGU---------------UGGCGGUUGCCG- -5'
7004 3' -52.9 NC_001875.2 + 61591 0.66 0.961619
Target:  5'- ---cGGCgacgGCU-CGGgCGCCGGCGGCg -3'
miRNA:   3'- gaacUCGa---UGAcGUUgGCGGUUGCCG- -5'
7004 3' -52.9 NC_001875.2 + 105826 0.66 0.961619
Target:  5'- ---cAGCaUGCUGaccgccCAGgCGCCGACGGCc -3'
miRNA:   3'- gaacUCG-AUGAC------GUUgGCGGUUGCCG- -5'
7004 3' -52.9 NC_001875.2 + 56968 0.66 0.961619
Target:  5'- --cGuGUUuuaGCUGCAAauCCGCCAcgACGGUu -3'
miRNA:   3'- gaaCuCGA---UGACGUU--GGCGGU--UGCCG- -5'
7004 3' -52.9 NC_001875.2 + 13366 0.66 0.961619
Target:  5'- gUUGaAGCUGgUGCGcACCGUUucuacgcACGGCa -3'
miRNA:   3'- gAAC-UCGAUgACGU-UGGCGGu------UGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.