miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7004 5' -66.4 NC_001875.2 + 50677 0.66 0.388611
Target:  5'- uGGCCGUCG-GCCCGaaAGgCGCCUg- -3'
miRNA:   3'- gUCGGCGGCaCGGGCg-UCgGCGGGaa -5'
7004 5' -66.4 NC_001875.2 + 90401 0.66 0.388611
Target:  5'- cCGG-CGCCuGUGCgCgCGCAGCgGCCCc- -3'
miRNA:   3'- -GUCgGCGG-CACG-G-GCGUCGgCGGGaa -5'
7004 5' -66.4 NC_001875.2 + 37585 0.66 0.388611
Target:  5'- -cGCCGgCGcgaGCgCCGCGGCCGgCCg- -3'
miRNA:   3'- guCGGCgGCa--CG-GGCGUCGGCgGGaa -5'
7004 5' -66.4 NC_001875.2 + 120680 0.66 0.388611
Target:  5'- -cGCUGCUGUGCgCCaucgacCGGCCGUCCa- -3'
miRNA:   3'- guCGGCGGCACG-GGc-----GUCGGCGGGaa -5'
7004 5' -66.4 NC_001875.2 + 17800 0.66 0.387808
Target:  5'- gCAGCC-CgCGUGCUaccaucuggaccgCGCGGCCGCCa-- -3'
miRNA:   3'- -GUCGGcG-GCACGG-------------GCGUCGGCGGgaa -5'
7004 5' -66.4 NC_001875.2 + 99703 0.66 0.38381
Target:  5'- -cGCCGCCGUugagcgcuaugcggcGCUCGCAaguGCgCGCCUUg -3'
miRNA:   3'- guCGGCGGCA---------------CGGGCGU---CG-GCGGGAa -5'
7004 5' -66.4 NC_001875.2 + 4579 0.66 0.381425
Target:  5'- gCAGCCGCa-UGCCCGacaugcgcacgaagaGGCCGCgCUc -3'
miRNA:   3'- -GUCGGCGgcACGGGCg--------------UCGGCGgGAa -5'
7004 5' -66.4 NC_001875.2 + 67133 0.66 0.380632
Target:  5'- uGGCCagcGCCGUGUugCUGCGGCUGUCUg- -3'
miRNA:   3'- gUCGG---CGGCACG--GGCGUCGGCGGGaa -5'
7004 5' -66.4 NC_001875.2 + 54391 0.66 0.380632
Target:  5'- gGGCCGCCaGUuguggaacgGCUCGUccauGCCGCUCUUg -3'
miRNA:   3'- gUCGGCGG-CA---------CGGGCGu---CGGCGGGAA- -5'
7004 5' -66.4 NC_001875.2 + 28513 0.66 0.380632
Target:  5'- cUAGCCGUCGcGCaCGC-GUCGCCCg- -3'
miRNA:   3'- -GUCGGCGGCaCGgGCGuCGGCGGGaa -5'
7004 5' -66.4 NC_001875.2 + 108511 0.66 0.380632
Target:  5'- -cGCCGUCGUGCUC-CuuuCCGCCCa- -3'
miRNA:   3'- guCGGCGGCACGGGcGuc-GGCGGGaa -5'
7004 5' -66.4 NC_001875.2 + 124840 0.66 0.372763
Target:  5'- -cGCCGCCG-GCCaGCAGCaCaCCCa- -3'
miRNA:   3'- guCGGCGGCaCGGgCGUCG-GcGGGaa -5'
7004 5' -66.4 NC_001875.2 + 65799 0.66 0.372763
Target:  5'- uCGGCgCGCgGUGCCUGCGcGgCGCCa-- -3'
miRNA:   3'- -GUCG-GCGgCACGGGCGU-CgGCGGgaa -5'
7004 5' -66.4 NC_001875.2 + 106497 0.66 0.372763
Target:  5'- aCAGCuCGCCGguguaGCCCGCGucGaugaUGCCCUc -3'
miRNA:   3'- -GUCG-GCGGCa----CGGGCGU--Cg---GCGGGAa -5'
7004 5' -66.4 NC_001875.2 + 101893 0.66 0.365005
Target:  5'- aCAG-CGCCGUcGCCUuCGGCUGCCUg- -3'
miRNA:   3'- -GUCgGCGGCA-CGGGcGUCGGCGGGaa -5'
7004 5' -66.4 NC_001875.2 + 82206 0.66 0.364236
Target:  5'- gCGGCCGCuCGUGUcgCCGCuggaaguccaggaAGCCGCUUg- -3'
miRNA:   3'- -GUCGGCG-GCACG--GGCG-------------UCGGCGGGaa -5'
7004 5' -66.4 NC_001875.2 + 96478 0.66 0.356602
Target:  5'- cCAGCUGCUccaccUGCCCGUguaucucGGCCGCCa-- -3'
miRNA:   3'- -GUCGGCGGc----ACGGGCG-------UCGGCGGgaa -5'
7004 5' -66.4 NC_001875.2 + 72126 0.66 0.349828
Target:  5'- cCAGCgcgaGCCGcUGCUCGCucGCCaGCCCa- -3'
miRNA:   3'- -GUCGg---CGGC-ACGGGCGu-CGG-CGGGaa -5'
7004 5' -66.4 NC_001875.2 + 92171 0.66 0.349828
Target:  5'- gCAGCuCGCCGccGCgCGCcGCCGgCCCa- -3'
miRNA:   3'- -GUCG-GCGGCa-CGgGCGuCGGC-GGGaa -5'
7004 5' -66.4 NC_001875.2 + 46276 0.66 0.349081
Target:  5'- -uGCCGCCcaGCCCGUugugaugAGgCGCCCg- -3'
miRNA:   3'- guCGGCGGcaCGGGCG-------UCgGCGGGaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.