miRNA display CGI


Results 21 - 40 of 272 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7005 3' -66.9 NC_001875.2 + 130117 0.66 0.418797
Target:  5'- cGgCGGCgCGACcgGUGUCGCGCCCGcaGCa -3'
miRNA:   3'- -CgGCCG-GUUG--CGCGGCGCGGGCc-CGc -5'
7005 3' -66.9 NC_001875.2 + 33551 0.66 0.418797
Target:  5'- cGuuGGCCAcaguGCGguCGCCGCggggcaccauGCCCGagucGGCGa -3'
miRNA:   3'- -CggCCGGU----UGC--GCGGCG----------CGGGC----CCGC- -5'
7005 3' -66.9 NC_001875.2 + 37112 0.66 0.418797
Target:  5'- uGCgGGC--GCgGCGCCGCGCC--GGCGu -3'
miRNA:   3'- -CGgCCGguUG-CGCGGCGCGGgcCCGC- -5'
7005 3' -66.9 NC_001875.2 + 74308 0.66 0.418797
Target:  5'- cGCCua-CGGCGCGCagGCGCCggacagcaCGGGCGu -3'
miRNA:   3'- -CGGccgGUUGCGCGg-CGCGG--------GCCCGC- -5'
7005 3' -66.9 NC_001875.2 + 97963 0.66 0.418797
Target:  5'- -gCGGCCAccgaaACGCcguucugccgGCCGCGCaCGGuGCGc -3'
miRNA:   3'- cgGCCGGU-----UGCG----------CGGCGCGgGCC-CGC- -5'
7005 3' -66.9 NC_001875.2 + 53872 0.66 0.418797
Target:  5'- cGUCGGCCuguugguCGUGCgGcCGCCgCGGcGCa -3'
miRNA:   3'- -CGGCCGGuu-----GCGCGgC-GCGG-GCC-CGc -5'
7005 3' -66.9 NC_001875.2 + 30942 0.66 0.418797
Target:  5'- gGCCGcacaggucucGCCAuggcgcccacgcGCGCGCUGCGCCuCGcGCu -3'
miRNA:   3'- -CGGC----------CGGU------------UGCGCGGCGCGG-GCcCGc -5'
7005 3' -66.9 NC_001875.2 + 75474 0.66 0.417979
Target:  5'- cGCCGGUuugaCAACGgGCauguCGCGCCUGcgucgcaGGCGc -3'
miRNA:   3'- -CGGCCG----GUUGCgCG----GCGCGGGC-------CCGC- -5'
7005 3' -66.9 NC_001875.2 + 67599 0.66 0.416346
Target:  5'- cGUCGGUguGCaccguuuggaacguGCGCgGCugacuGCCCGGGUGg -3'
miRNA:   3'- -CGGCCGguUG--------------CGCGgCG-----CGGGCCCGC- -5'
7005 3' -66.9 NC_001875.2 + 114914 0.66 0.416346
Target:  5'- -aCGcGCCGAUGCGCucaaacacgaggccCGCGCCgucgucgaUGGGCGu -3'
miRNA:   3'- cgGC-CGGUUGCGCG--------------GCGCGG--------GCCCGC- -5'
7005 3' -66.9 NC_001875.2 + 42881 0.66 0.413903
Target:  5'- cGCCaGCgCAACGCGUucaacgucgaggcugUGCGCCgcaugccgUGGGCGu -3'
miRNA:   3'- -CGGcCG-GUUGCGCG---------------GCGCGG--------GCCCGC- -5'
7005 3' -66.9 NC_001875.2 + 54576 0.66 0.41066
Target:  5'- cGgCGGCCGcuucGCccgGCGgCGCGCCCacGGCGc -3'
miRNA:   3'- -CgGCCGGU----UG---CGCgGCGCGGGc-CCGC- -5'
7005 3' -66.9 NC_001875.2 + 41920 0.66 0.41066
Target:  5'- gGCCcGCgGACGCGCCGCccuuuauauGCgCGGcGCc -3'
miRNA:   3'- -CGGcCGgUUGCGCGGCG---------CGgGCC-CGc -5'
7005 3' -66.9 NC_001875.2 + 17083 0.66 0.41066
Target:  5'- aGCUGGUCAggccggGCaaGCCGCGCgCCacuGGCGg -3'
miRNA:   3'- -CGGCCGGU------UGcgCGGCGCG-GGc--CCGC- -5'
7005 3' -66.9 NC_001875.2 + 66305 0.66 0.41066
Target:  5'- uGCgCGGCCGGCGaGuuGaugGCgUGGGCGg -3'
miRNA:   3'- -CG-GCCGGUUGCgCggCg--CGgGCCCGC- -5'
7005 3' -66.9 NC_001875.2 + 118322 0.66 0.41066
Target:  5'- gGCCGGCC-GCGCGCUGCaggugaugaaCCUGuuuuugaacagcGGCGg -3'
miRNA:   3'- -CGGCCGGuUGCGCGGCGc---------GGGC------------CCGC- -5'
7005 3' -66.9 NC_001875.2 + 71176 0.66 0.41066
Target:  5'- uGCC-GCCAGCGCGCacuuugguacgCGCauugGCUgGGGCa -3'
miRNA:   3'- -CGGcCGGUUGCGCG-----------GCG----CGGgCCCGc -5'
7005 3' -66.9 NC_001875.2 + 33808 0.66 0.41066
Target:  5'- uGCCcGUCGGCGCaCgGCGCgCGGGgGa -3'
miRNA:   3'- -CGGcCGGUUGCGcGgCGCGgGCCCgC- -5'
7005 3' -66.9 NC_001875.2 + 130784 0.66 0.41066
Target:  5'- cGCgGucGCCAACguuGCGCCcaacgcuguGCGCCuCGGGCc -3'
miRNA:   3'- -CGgC--CGGUUG---CGCGG---------CGCGG-GCCCGc -5'
7005 3' -66.9 NC_001875.2 + 50547 0.66 0.41066
Target:  5'- cGCCGG-CGGCGCG-CGUGUCUuuugcgGGGCa -3'
miRNA:   3'- -CGGCCgGUUGCGCgGCGCGGG------CCCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.