miRNA display CGI


Results 21 - 40 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7005 5' -49.5 NC_001875.2 + 29054 0.66 0.99479
Target:  5'- cGCGCUCAAGaccauucCCGGcaguUUUGAAGCGcuGCa -3'
miRNA:   3'- uCGCGAGUUU-------GGUC----AAAUUUCGC--CGc -5'
7005 5' -49.5 NC_001875.2 + 68041 0.66 0.994016
Target:  5'- cGCGC-CAAAgCGGUUU---GCGGCc -3'
miRNA:   3'- uCGCGaGUUUgGUCAAAuuuCGCCGc -5'
7005 5' -49.5 NC_001875.2 + 60192 0.66 0.994016
Target:  5'- cAGCGCUUcguuGAauugcGCCGGcggcagaUUGAAGCGGCc -3'
miRNA:   3'- -UCGCGAG----UU-----UGGUCa------AAUUUCGCCGc -5'
7005 5' -49.5 NC_001875.2 + 88112 0.66 0.994016
Target:  5'- uGGUGCaguacuuugCGGGCaCGGUgcuGAGCGGCGc -3'
miRNA:   3'- -UCGCGa--------GUUUG-GUCAaauUUCGCCGC- -5'
7005 5' -49.5 NC_001875.2 + 37588 0.66 0.993051
Target:  5'- cGGCGCgagCGccgcGGCCGGccgcacGGCGGCGu -3'
miRNA:   3'- -UCGCGa--GU----UUGGUCaaauu-UCGCCGC- -5'
7005 5' -49.5 NC_001875.2 + 57680 0.66 0.993051
Target:  5'- cGCGUcCAAGCUGGc----GGCGGCGg -3'
miRNA:   3'- uCGCGaGUUUGGUCaaauuUCGCCGC- -5'
7005 5' -49.5 NC_001875.2 + 32866 0.66 0.993051
Target:  5'- uAGCGUUCAcGCgG----AAAGCGGCGc -3'
miRNA:   3'- -UCGCGAGUuUGgUcaaaUUUCGCCGC- -5'
7005 5' -49.5 NC_001875.2 + 57518 0.67 0.991966
Target:  5'- cGGCGCcaCAAACguGUUguagcUAGAGCaGCGg -3'
miRNA:   3'- -UCGCGa-GUUUGguCAA-----AUUUCGcCGC- -5'
7005 5' -49.5 NC_001875.2 + 91875 0.67 0.991966
Target:  5'- gGGCGC-Cu-GCUGGUgc--GGCGGCGg -3'
miRNA:   3'- -UCGCGaGuuUGGUCAaauuUCGCCGC- -5'
7005 5' -49.5 NC_001875.2 + 50017 0.67 0.991966
Target:  5'- gGGCGCgCGuggucGCCGGgcggcGAGGCGGCc -3'
miRNA:   3'- -UCGCGaGUu----UGGUCaaa--UUUCGCCGc -5'
7005 5' -49.5 NC_001875.2 + 117165 0.67 0.991966
Target:  5'- cGCGCUCGcaagcguauuCCAGUUUGuGGCuGCa -3'
miRNA:   3'- uCGCGAGUuu--------GGUCAAAUuUCGcCGc -5'
7005 5' -49.5 NC_001875.2 + 57568 0.67 0.991966
Target:  5'- cGCGCgUAAACCGGc-----GCGGCGu -3'
miRNA:   3'- uCGCGaGUUUGGUCaaauuuCGCCGC- -5'
7005 5' -49.5 NC_001875.2 + 113369 0.67 0.991966
Target:  5'- cGuCGCUCAuugcCCGGUc---AGCGGCGc -3'
miRNA:   3'- uC-GCGAGUuu--GGUCAaauuUCGCCGC- -5'
7005 5' -49.5 NC_001875.2 + 25303 0.67 0.991966
Target:  5'- cGCGCUCGucgacCCAGUUUAucgugaucGAG-GGCa -3'
miRNA:   3'- uCGCGAGUuu---GGUCAAAU--------UUCgCCGc -5'
7005 5' -49.5 NC_001875.2 + 86939 0.67 0.991966
Target:  5'- gAGUGCgagggCGAgccGCCAGcguccAAGCGGCGc -3'
miRNA:   3'- -UCGCGa----GUU---UGGUCaaau-UUCGCCGC- -5'
7005 5' -49.5 NC_001875.2 + 108903 0.67 0.99075
Target:  5'- cGCGcCUCAAcgcGuuGGUggacgacaUUAAAGCGGCGc -3'
miRNA:   3'- uCGC-GAGUU---UggUCA--------AAUUUCGCCGC- -5'
7005 5' -49.5 NC_001875.2 + 113509 0.67 0.99075
Target:  5'- aGGUGUUCAcg-UAGUcauuguagUUAAAGCGGCGg -3'
miRNA:   3'- -UCGCGAGUuugGUCA--------AAUUUCGCCGC- -5'
7005 5' -49.5 NC_001875.2 + 54171 0.67 0.99075
Target:  5'- cGCGCUCGGAC--------AGCGGCGc -3'
miRNA:   3'- uCGCGAGUUUGgucaaauuUCGCCGC- -5'
7005 5' -49.5 NC_001875.2 + 3108 0.67 0.99075
Target:  5'- gGGCGCggcucgcggcgCAGACCu-----GGGCGGCGa -3'
miRNA:   3'- -UCGCGa----------GUUUGGucaaauUUCGCCGC- -5'
7005 5' -49.5 NC_001875.2 + 131552 0.67 0.99075
Target:  5'- aGGUGCUgGAccugGCCAGcau---GCGGCGa -3'
miRNA:   3'- -UCGCGAgUU----UGGUCaaauuuCGCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.