miRNA display CGI


Results 21 - 40 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7006 3' -53.5 NC_001875.2 + 98942 0.66 0.955358
Target:  5'- gCGCGACGCgCGCGuGUucaGCCGuuUGCa -3'
miRNA:   3'- gGCGCUGUG-GUGC-CAcc-UGGUuuACG- -5'
7006 3' -53.5 NC_001875.2 + 111828 0.66 0.955358
Target:  5'- uCCGCGugacgGCugCGCGaGccGGCCAGGUGUc -3'
miRNA:   3'- -GGCGC-----UGugGUGC-CacCUGGUUUACG- -5'
7006 3' -53.5 NC_001875.2 + 1181 0.66 0.955358
Target:  5'- gUCGCGGCacuuuGCCACGcUGaACCGcAUGCg -3'
miRNA:   3'- -GGCGCUG-----UGGUGCcACcUGGUuUACG- -5'
7006 3' -53.5 NC_001875.2 + 108052 0.66 0.955358
Target:  5'- -aGCGACACguCGGcgaccUGGGCaacGUGCg -3'
miRNA:   3'- ggCGCUGUGguGCC-----ACCUGguuUACG- -5'
7006 3' -53.5 NC_001875.2 + 26624 0.66 0.954176
Target:  5'- gCCGCccaagcaugacgagGGCGCCACGGcgacaaaGGGCgAucuGAUGCa -3'
miRNA:   3'- -GGCG--------------CUGUGGUGCCa------CCUGgU---UUACG- -5'
7006 3' -53.5 NC_001875.2 + 30208 0.67 0.951335
Target:  5'- gCCGCGACgGCCGuuGUGGcgACCAcuuUGUa -3'
miRNA:   3'- -GGCGCUG-UGGUgcCACC--UGGUuu-ACG- -5'
7006 3' -53.5 NC_001875.2 + 40089 0.67 0.951335
Target:  5'- gCCGCGGCgcugacgcGCCACuGGcUGGcgcuguacuuGCCGAcgGCc -3'
miRNA:   3'- -GGCGCUG--------UGGUG-CC-ACC----------UGGUUuaCG- -5'
7006 3' -53.5 NC_001875.2 + 130677 0.67 0.951335
Target:  5'- gCCGCGACgacGCCucUGGcUGGuCCGcuUGCa -3'
miRNA:   3'- -GGCGCUG---UGGu-GCC-ACCuGGUuuACG- -5'
7006 3' -53.5 NC_001875.2 + 37117 0.67 0.94966
Target:  5'- gCGCGGCGCCGCGccGGcguuugcgucuuuCCGcGUGCg -3'
miRNA:   3'- gGCGCUGUGGUGCcaCCu------------GGUuUACG- -5'
7006 3' -53.5 NC_001875.2 + 15848 0.67 0.947075
Target:  5'- aCCGCGAgACCAgcGUGGugCucAUGa -3'
miRNA:   3'- -GGCGCUgUGGUgcCACCugGuuUACg -5'
7006 3' -53.5 NC_001875.2 + 58367 0.67 0.947075
Target:  5'- cUCGUcgGACGCguCGGUGGA-CGAcgGCu -3'
miRNA:   3'- -GGCG--CUGUGguGCCACCUgGUUuaCG- -5'
7006 3' -53.5 NC_001875.2 + 51587 0.67 0.947075
Target:  5'- gCgGCGugGCCACGuuuaacagcuuGUGcGACCAcugGCa -3'
miRNA:   3'- -GgCGCugUGGUGC-----------CAC-CUGGUuuaCG- -5'
7006 3' -53.5 NC_001875.2 + 39268 0.67 0.944405
Target:  5'- gCGCGACGCgG-GGcGGcuucugcccgccgacACCAAGUGCg -3'
miRNA:   3'- gGCGCUGUGgUgCCaCC---------------UGGUUUACG- -5'
7006 3' -53.5 NC_001875.2 + 18049 0.67 0.944405
Target:  5'- aUGCGACA-UGCGcGUGGcggacaaccggccaaGCCAGGUGCu -3'
miRNA:   3'- gGCGCUGUgGUGC-CACC---------------UGGUUUACG- -5'
7006 3' -53.5 NC_001875.2 + 77961 0.67 0.942577
Target:  5'- gCCGCGGCGgCGCGcacGACCAAcaggccgacgGUGCc -3'
miRNA:   3'- -GGCGCUGUgGUGCcacCUGGUU----------UACG- -5'
7006 3' -53.5 NC_001875.2 + 68173 0.67 0.942577
Target:  5'- gCCGCgcaaGACGauuaCACGGUGGACgGucuucgGCu -3'
miRNA:   3'- -GGCG----CUGUg---GUGCCACCUGgUuua---CG- -5'
7006 3' -53.5 NC_001875.2 + 41031 0.67 0.942577
Target:  5'- gUCGCGACACguCGGUGaacACCAAc--- -3'
miRNA:   3'- -GGCGCUGUGguGCCACc--UGGUUuacg -5'
7006 3' -53.5 NC_001875.2 + 94260 0.67 0.942577
Target:  5'- gCCGCGGCGCuCGCGccGGcgcauCCAcucGAUGCc -3'
miRNA:   3'- -GGCGCUGUG-GUGCcaCCu----GGU---UUACG- -5'
7006 3' -53.5 NC_001875.2 + 43028 0.67 0.942577
Target:  5'- gCCGCG-CGCCGCGGcgcgcGGGCUAu---- -3'
miRNA:   3'- -GGCGCuGUGGUGCCa----CCUGGUuuacg -5'
7006 3' -53.5 NC_001875.2 + 52046 0.67 0.942577
Target:  5'- aCCGCGACACCGac-UGGAacgUCAAAgugggGCu -3'
miRNA:   3'- -GGCGCUGUGGUgccACCU---GGUUUa----CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.