miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7006 5' -54 NC_001875.2 + 43000 0.66 0.943168
Target:  5'- uUGGGcuGGGCCAACauugGCAA--GCCGu -3'
miRNA:   3'- gACCCauUCCGGUUGg---CGUUcaUGGC- -5'
7006 5' -54 NC_001875.2 + 77022 0.66 0.943168
Target:  5'- uUGaGGUGuucGGGCucggCAGCCGCGucgcggugcuAGUGCCGc -3'
miRNA:   3'- gAC-CCAU---UCCG----GUUGGCGU----------UCAUGGC- -5'
7006 5' -54 NC_001875.2 + 120057 0.66 0.938397
Target:  5'- uUGGGUGgucAGGCgcGCCGCGAGguugGCg- -3'
miRNA:   3'- gACCCAU---UCCGguUGGCGUUCa---UGgc -5'
7006 5' -54 NC_001875.2 + 42608 0.66 0.933376
Target:  5'- gCUGGGcAccGCCAACaCGCAAGUGuacuCCu -3'
miRNA:   3'- -GACCCaUucCGGUUG-GCGUUCAU----GGc -5'
7006 5' -54 NC_001875.2 + 39145 0.66 0.93286
Target:  5'- -cGGcGaUGAuGGCCAuuuugggGCCGCGAGgcggGCCGg -3'
miRNA:   3'- gaCC-C-AUU-CCGGU-------UGGCGUUCa---UGGC- -5'
7006 5' -54 NC_001875.2 + 39988 0.66 0.928105
Target:  5'- cCUGGGggcccguGGCCGACU---GGUACCa -3'
miRNA:   3'- -GACCCauu----CCGGUUGGcguUCAUGGc -5'
7006 5' -54 NC_001875.2 + 54521 0.67 0.922582
Target:  5'- uUGGGgccGGCCAccGCCGCGuacucggcGUACUGc -3'
miRNA:   3'- gACCCauuCCGGU--UGGCGUu-------CAUGGC- -5'
7006 5' -54 NC_001875.2 + 78834 0.68 0.877003
Target:  5'- gUGGGcaccacAGGCUGGCCGCAaAGUGCa- -3'
miRNA:   3'- gACCCau----UCCGGUUGGCGU-UCAUGgc -5'
7006 5' -54 NC_001875.2 + 62202 0.68 0.861853
Target:  5'- -cGGGcUGAGGCCGACgGCGuccACCu -3'
miRNA:   3'- gaCCC-AUUCCGGUUGgCGUucaUGGc -5'
7006 5' -54 NC_001875.2 + 7000 0.68 0.853948
Target:  5'- gUGGGUGugcugcuGGCCGGCgGCGcGUAUCu -3'
miRNA:   3'- gACCCAUu------CCGGUUGgCGUuCAUGGc -5'
7006 5' -54 NC_001875.2 + 105813 0.69 0.828996
Target:  5'- -aGGGUAuGGCCAacagcaugcugACCGCccAGGcGCCGa -3'
miRNA:   3'- gaCCCAUuCCGGU-----------UGGCG--UUCaUGGC- -5'
7006 5' -54 NC_001875.2 + 8196 0.7 0.783768
Target:  5'- gCUGGGUGGGGUCGccuuggggaaAUCGCAAGUuCUu -3'
miRNA:   3'- -GACCCAUUCCGGU----------UGGCGUUCAuGGc -5'
7006 5' -54 NC_001875.2 + 110466 1.08 0.004176
Target:  5'- gCUGGGUAAGGCCAACCGCAAGUACCGc -3'
miRNA:   3'- -GACCCAUUCCGGUUGGCGUUCAUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.