miRNA display CGI


Results 21 - 40 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7007 3' -48.1 NC_001875.2 + 64719 0.67 0.998368
Target:  5'- aCGGCGUCGagguguuuuUGGAAAUCUgcaacacggugggGUUGCg -3'
miRNA:   3'- gGCCGCGGC---------ACUUUUGGAaaa----------CAACG- -5'
7007 3' -48.1 NC_001875.2 + 88540 0.67 0.998337
Target:  5'- gCGGCGUCGUuuauuAACU---UGUUGCg -3'
miRNA:   3'- gGCCGCGGCAcuu--UUGGaaaACAACG- -5'
7007 3' -48.1 NC_001875.2 + 44487 0.67 0.997998
Target:  5'- aCCGGCGCgacc-AGGCCgaacUGUUGCa -3'
miRNA:   3'- -GGCCGCGgcacuUUUGGaaa-ACAACG- -5'
7007 3' -48.1 NC_001875.2 + 124348 0.67 0.997561
Target:  5'- aCGGCGCCGaucagccaaaUGAgcggcauGAGCU---UGUUGCu -3'
miRNA:   3'- gGCCGCGGC----------ACU-------UUUGGaaaACAACG- -5'
7007 3' -48.1 NC_001875.2 + 20719 0.67 0.997146
Target:  5'- gUGGCGCCGUGAcgcauugcuGCCg-----UGCa -3'
miRNA:   3'- gGCCGCGGCACUuu-------UGGaaaacaACG- -5'
7007 3' -48.1 NC_001875.2 + 18841 0.68 0.996618
Target:  5'- uUGGCGCUGUGGGAcCCcUUUGg--- -3'
miRNA:   3'- gGCCGCGGCACUUUuGGaAAACaacg -5'
7007 3' -48.1 NC_001875.2 + 36417 0.68 0.996618
Target:  5'- aCgGGCGCCGc-GAGGCCUUaccuUUGCg -3'
miRNA:   3'- -GgCCGCGGCacUUUUGGAAaac-AACG- -5'
7007 3' -48.1 NC_001875.2 + 39162 0.68 0.996618
Target:  5'- uUGGgGCCGcGAGgcgGGCCggcgGUUGCg -3'
miRNA:   3'- gGCCgCGGCaCUU---UUGGaaaaCAACG- -5'
7007 3' -48.1 NC_001875.2 + 56732 0.68 0.996618
Target:  5'- gCGGUGCCGUG-GGACUgucagagggUGaUGCa -3'
miRNA:   3'- gGCCGCGGCACuUUUGGaaa------ACaACG- -5'
7007 3' -48.1 NC_001875.2 + 38689 0.68 0.996012
Target:  5'- gCGGCGgCGUGGggcuGAACCUgaccgGcgGCa -3'
miRNA:   3'- gGCCGCgGCACU----UUUGGAaaa--CaaCG- -5'
7007 3' -48.1 NC_001875.2 + 98033 0.68 0.996012
Target:  5'- cCCGcGCGCCGUGc--GCCgacgGgcaagUGCg -3'
miRNA:   3'- -GGC-CGCGGCACuuuUGGaaaaCa----ACG- -5'
7007 3' -48.1 NC_001875.2 + 78044 0.68 0.996012
Target:  5'- gCCGGCGuuGaUGuucuuGGCCgcgUUGUacUGCg -3'
miRNA:   3'- -GGCCGCggC-ACuu---UUGGaa-AACA--ACG- -5'
7007 3' -48.1 NC_001875.2 + 67991 0.68 0.996012
Target:  5'- aCGGCGCCG-GAc-ACCUUUaUGUcGUc -3'
miRNA:   3'- gGCCGCGGCaCUuuUGGAAA-ACAaCG- -5'
7007 3' -48.1 NC_001875.2 + 77708 0.68 0.995319
Target:  5'- gUCGGUGCCGUaccGAccGGGCCcgUUUGUcaUGUa -3'
miRNA:   3'- -GGCCGCGGCA---CU--UUUGGa-AAACA--ACG- -5'
7007 3' -48.1 NC_001875.2 + 64960 0.68 0.995319
Target:  5'- aUGGCGCCGcGAAuuaGGCCgcg-GUcgUGCa -3'
miRNA:   3'- gGCCGCGGCaCUU---UUGGaaaaCA--ACG- -5'
7007 3' -48.1 NC_001875.2 + 37565 0.68 0.99517
Target:  5'- aCCGGCGCCaaGGAAACCauaauc-GCa -3'
miRNA:   3'- -GGCCGCGGcaCUUUUGGaaaacaaCG- -5'
7007 3' -48.1 NC_001875.2 + 37414 0.68 0.994532
Target:  5'- aCGGCG-CGUGGAAgagGCCg--UGgcGCa -3'
miRNA:   3'- gGCCGCgGCACUUU---UGGaaaACaaCG- -5'
7007 3' -48.1 NC_001875.2 + 126503 0.68 0.994532
Target:  5'- cCUGaCGCCGUGAAGACUg-----UGCa -3'
miRNA:   3'- -GGCcGCGGCACUUUUGGaaaacaACG- -5'
7007 3' -48.1 NC_001875.2 + 49465 0.68 0.994532
Target:  5'- aCGGCGCCGUGGuuccgcgcgcGCCcgaguUUGCa -3'
miRNA:   3'- gGCCGCGGCACUuu--------UGGaaaacAACG- -5'
7007 3' -48.1 NC_001875.2 + 98886 0.69 0.993641
Target:  5'- gCgGGCGCCGUuucGGGAAUCgaUUGgcGCc -3'
miRNA:   3'- -GgCCGCGGCA---CUUUUGGaaAACaaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.