Results 21 - 40 of 308 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7007 | 5' | -58 | NC_001875.2 | + | 70791 | 0.66 | 0.815293 |
Target: 5'- --uUAGCGGUGCGUCA--GCGCCGgCu -3' miRNA: 3'- gccGUCGUUACGCAGUgcCGCGGUgG- -5' |
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7007 | 5' | -58 | NC_001875.2 | + | 37974 | 0.66 | 0.815293 |
Target: 5'- gCGGCGGCc-UGCG-CGCucaGCGCCgacaACCg -3' miRNA: 3'- -GCCGUCGuuACGCaGUGc--CGCGG----UGG- -5' |
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7007 | 5' | -58 | NC_001875.2 | + | 98791 | 0.66 | 0.815293 |
Target: 5'- gCGGaacGCuAUcGCGcggCGCGGCGcCCGCCg -3' miRNA: 3'- -GCCgu-CGuUA-CGCa--GUGCCGC-GGUGG- -5' |
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7007 | 5' | -58 | NC_001875.2 | + | 42992 | 0.66 | 0.814429 |
Target: 5'- gCGGCGGCcguUGCGaagguggccuccaUUGCGaGUGCCGCg -3' miRNA: 3'- -GCCGUCGuu-ACGC-------------AGUGC-CGCGGUGg -5' |
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7007 | 5' | -58 | NC_001875.2 | + | 111945 | 0.66 | 0.811829 |
Target: 5'- aCGaGCAGCuaaaagcgcacGCGUUucgcaaACGGCGCCcgcGCCg -3' miRNA: 3'- -GC-CGUCGuua--------CGCAG------UGCCGCGG---UGG- -5' |
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7007 | 5' | -58 | NC_001875.2 | + | 57535 | 0.66 | 0.810087 |
Target: 5'- cCGGCgccugcgcgccguaGGCGAUGCGcuguUCgcgcguaaaccggcGCGGCGUCGCg -3' miRNA: 3'- -GCCG--------------UCGUUACGC----AG--------------UGCCGCGGUGg -5' |
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7007 | 5' | -58 | NC_001875.2 | + | 41461 | 0.66 | 0.810087 |
Target: 5'- cCGGUuGCGGcGCG-CGCGGCGUgucuuguguggucugCGCCg -3' miRNA: 3'- -GCCGuCGUUaCGCaGUGCCGCG---------------GUGG- -5' |
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7007 | 5' | -58 | NC_001875.2 | + | 17287 | 0.66 | 0.806584 |
Target: 5'- -cGCcGCAcuggaGCGUCGUGaGCGCCGCCg -3' miRNA: 3'- gcCGuCGUua---CGCAGUGC-CGCGGUGG- -5' |
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7007 | 5' | -58 | NC_001875.2 | + | 90011 | 0.66 | 0.806584 |
Target: 5'- gCGGCAacuggacgcGCAAcUG-GcCGCGGCGCCGgCg -3' miRNA: 3'- -GCCGU---------CGUU-ACgCaGUGCCGCGGUgG- -5' |
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7007 | 5' | -58 | NC_001875.2 | + | 89131 | 0.66 | 0.806584 |
Target: 5'- cCGGguGCGccuUGCGUacgaaacCGcGCGCCGCg -3' miRNA: 3'- -GCCguCGUu--ACGCAgu-----GC-CGCGGUGg -5' |
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7007 | 5' | -58 | NC_001875.2 | + | 1741 | 0.66 | 0.805704 |
Target: 5'- aCGGCgugugcuAGCGGUGCcUCAgCGGCGacCCugCu -3' miRNA: 3'- -GCCG-------UCGUUACGcAGU-GCCGC--GGugG- -5' |
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7007 | 5' | -58 | NC_001875.2 | + | 79312 | 0.66 | 0.797718 |
Target: 5'- uGGCGcguGCuuucGAUGag-CGCGGCGCUGCCu -3' miRNA: 3'- gCCGU---CG----UUACgcaGUGCCGCGGUGG- -5' |
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7007 | 5' | -58 | NC_001875.2 | + | 82957 | 0.66 | 0.797718 |
Target: 5'- -cGCGGCGGgcGCGUCcuCGGCGaCCgACCc -3' miRNA: 3'- gcCGUCGUUa-CGCAGu-GCCGC-GG-UGG- -5' |
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7007 | 5' | -58 | NC_001875.2 | + | 6938 | 0.66 | 0.797718 |
Target: 5'- ---gAGCAAcGCGUCguGCGuGCGCCGCg -3' miRNA: 3'- gccgUCGUUaCGCAG--UGC-CGCGGUGg -5' |
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7007 | 5' | -58 | NC_001875.2 | + | 66238 | 0.66 | 0.797718 |
Target: 5'- cCGGguGa---GCGUuucgCACuGCGCCGCCa -3' miRNA: 3'- -GCCguCguuaCGCA----GUGcCGCGGUGG- -5' |
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7007 | 5' | -58 | NC_001875.2 | + | 110474 | 0.66 | 0.797718 |
Target: 5'- aGGCcaaccGCAAguaccGCGUCaagcacACGGCGCUGCUc -3' miRNA: 3'- gCCGu----CGUUa----CGCAG------UGCCGCGGUGG- -5' |
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7007 | 5' | -58 | NC_001875.2 | + | 122058 | 0.66 | 0.797718 |
Target: 5'- aCGcGCAGUgcccgGAUGUGcCGCGuGCGCUugGCCu -3' miRNA: 3'- -GC-CGUCG-----UUACGCaGUGC-CGCGG--UGG- -5' |
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7007 | 5' | -58 | NC_001875.2 | + | 99032 | 0.66 | 0.797718 |
Target: 5'- gCGGCgccguucgccgAGCu-UGCcggCGCGGCGcCCGCCc -3' miRNA: 3'- -GCCG-----------UCGuuACGca-GUGCCGC-GGUGG- -5' |
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7007 | 5' | -58 | NC_001875.2 | + | 114719 | 0.66 | 0.796824 |
Target: 5'- aCGGCgugugcuauuuuuGGCGGUGCGUCA--GCGaCgACCg -3' miRNA: 3'- -GCCG-------------UCGUUACGCAGUgcCGC-GgUGG- -5' |
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7007 | 5' | -58 | NC_001875.2 | + | 97528 | 0.66 | 0.792328 |
Target: 5'- gGGCgaaauugugaccgaaGGCAAcGCG-CACGaGUGCCACa -3' miRNA: 3'- gCCG---------------UCGUUaCGCaGUGC-CGCGGUGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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