miRNA display CGI


Results 21 - 40 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7008 3' -50.2 NC_001875.2 + 131671 0.67 0.981258
Target:  5'- gAGCUugcAGAGC-CACGUGUUUgGCGc -3'
miRNA:   3'- gUCGAu--UUUCGcGUGCGCAAAgCGUu -5'
7008 3' -50.2 NC_001875.2 + 43311 0.67 0.981258
Target:  5'- gUAGCggc--GCGCGCGCGggUCgGCGu -3'
miRNA:   3'- -GUCGauuuuCGCGUGCGCaaAG-CGUu -5'
7008 3' -50.2 NC_001875.2 + 72660 0.67 0.981258
Target:  5'- aAGUUGuuGGCGCGCaaaauguCGUUUUGCAGg -3'
miRNA:   3'- gUCGAUuuUCGCGUGc------GCAAAGCGUU- -5'
7008 3' -50.2 NC_001875.2 + 125190 0.67 0.981258
Target:  5'- gAGUgUAAGAGCGCGCGCaauGUUUCcCGAu -3'
miRNA:   3'- gUCG-AUUUUCGCGUGCG---CAAAGcGUU- -5'
7008 3' -50.2 NC_001875.2 + 108999 0.67 0.981258
Target:  5'- aGGCUGGAcGCGUACGuCGUgcCGCc- -3'
miRNA:   3'- gUCGAUUUuCGCGUGC-GCAaaGCGuu -5'
7008 3' -50.2 NC_001875.2 + 59892 0.67 0.978932
Target:  5'- gCGGCgacAGGCuGCGCGCGgagCGCGc -3'
miRNA:   3'- -GUCGauuUUCG-CGUGCGCaaaGCGUu -5'
7008 3' -50.2 NC_001875.2 + 65773 0.67 0.978932
Target:  5'- gCGGCUGGgcGAGCacGCGCGCGgcgucggCGCGc -3'
miRNA:   3'- -GUCGAUU--UUCG--CGUGCGCaaa----GCGUu -5'
7008 3' -50.2 NC_001875.2 + 74064 0.67 0.978932
Target:  5'- uCGGCgugGAuuGUGCGCGCcccUCGCAAa -3'
miRNA:   3'- -GUCGa--UUuuCGCGUGCGcaaAGCGUU- -5'
7008 3' -50.2 NC_001875.2 + 68844 0.67 0.978932
Target:  5'- uGGCggacGGGuCGCACGCGUg-CGCGAg -3'
miRNA:   3'- gUCGauu-UUC-GCGUGCGCAaaGCGUU- -5'
7008 3' -50.2 NC_001875.2 + 112310 0.67 0.978932
Target:  5'- -uGCUAGAcGCGUACGUGUUgagUUGCu- -3'
miRNA:   3'- guCGAUUUuCGCGUGCGCAA---AGCGuu -5'
7008 3' -50.2 NC_001875.2 + 99919 0.67 0.976397
Target:  5'- gAGCgGGccGCGCGCGCGg--UGCAGc -3'
miRNA:   3'- gUCGaUUuuCGCGUGCGCaaaGCGUU- -5'
7008 3' -50.2 NC_001875.2 + 60363 0.67 0.976397
Target:  5'- -uGCUGGAGGUGUACGaauCGUUggcgCGCAc -3'
miRNA:   3'- guCGAUUUUCGCGUGC---GCAAa---GCGUu -5'
7008 3' -50.2 NC_001875.2 + 120416 0.67 0.976397
Target:  5'- aGGCUGGAAGUGCGCag---UCGCAc -3'
miRNA:   3'- gUCGAUUUUCGCGUGcgcaaAGCGUu -5'
7008 3' -50.2 NC_001875.2 + 58756 0.67 0.974773
Target:  5'- gAGCUGuauGCGCGCGUGgaggcaaucccugUCGCGg -3'
miRNA:   3'- gUCGAUuuuCGCGUGCGCaa-----------AGCGUu -5'
7008 3' -50.2 NC_001875.2 + 62484 0.67 0.973646
Target:  5'- gCAGCg---GGCGCacgccgcugacuGCGCGUUUCGUc- -3'
miRNA:   3'- -GUCGauuuUCGCG------------UGCGCAAAGCGuu -5'
7008 3' -50.2 NC_001875.2 + 112709 0.67 0.97067
Target:  5'- -cGCUGAcGGCGCcgccgugguagGCGCGUcgCGCGc -3'
miRNA:   3'- guCGAUUuUCGCG-----------UGCGCAaaGCGUu -5'
7008 3' -50.2 NC_001875.2 + 49946 0.67 0.97067
Target:  5'- uCAGCUGgucgucGGAGCuGCGCGCGcugcugUCGCu- -3'
miRNA:   3'- -GUCGAU------UUUCG-CGUGCGCaa----AGCGuu -5'
7008 3' -50.2 NC_001875.2 + 63264 0.67 0.97067
Target:  5'- gCGGCcAGcGGCGcCACGCGgugCGCGAc -3'
miRNA:   3'- -GUCGaUUuUCGC-GUGCGCaaaGCGUU- -5'
7008 3' -50.2 NC_001875.2 + 30452 0.68 0.96746
Target:  5'- gCAGCUGGc-GCGCguuGCGCGcgUUUGCAAc -3'
miRNA:   3'- -GUCGAUUuuCGCG---UGCGCa-AAGCGUU- -5'
7008 3' -50.2 NC_001875.2 + 72940 0.68 0.96746
Target:  5'- gCGGCUucguAGCGCGCGU---UCGCGg -3'
miRNA:   3'- -GUCGAuuu-UCGCGUGCGcaaAGCGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.