Results 21 - 40 of 204 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7008 | 5' | -60.6 | NC_001875.2 | + | 31006 | 0.66 | 0.709251 |
Target: 5'- aCG-CGCG-CGCGGCCGA--CUUG-GCa -3' miRNA: 3'- -GCgGCGCuGCGCCGGCUcaGAACgCG- -5' |
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7008 | 5' | -60.6 | NC_001875.2 | + | 82388 | 0.66 | 0.709251 |
Target: 5'- aCGCgGCGAcCGUcGCUGAGUCgcugagcuacaUGUGCa -3' miRNA: 3'- -GCGgCGCU-GCGcCGGCUCAGa----------ACGCG- -5' |
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7008 | 5' | -60.6 | NC_001875.2 | + | 32783 | 0.66 | 0.709251 |
Target: 5'- uCG-CGCGGCGUGGgCGGG-CgccGCGCc -3' miRNA: 3'- -GCgGCGCUGCGCCgGCUCaGaa-CGCG- -5' |
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7008 | 5' | -60.6 | NC_001875.2 | + | 117337 | 0.66 | 0.708283 |
Target: 5'- aCGgCGCGGCGCgggcgaaccggcgGGCCGGcuggccGUCggggagGCGCc -3' miRNA: 3'- -GCgGCGCUGCG-------------CCGGCU------CAGaa----CGCG- -5' |
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7008 | 5' | -60.6 | NC_001875.2 | + | 12968 | 0.66 | 0.699539 |
Target: 5'- gGUCGCGACacggGCGuGCCcGGUUUgauguacaUGCGCg -3' miRNA: 3'- gCGGCGCUG----CGC-CGGcUCAGA--------ACGCG- -5' |
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7008 | 5' | -60.6 | NC_001875.2 | + | 38542 | 0.66 | 0.699539 |
Target: 5'- uGCaGCu-CGUGGCCGGGUUgcugcgucgGCGCg -3' miRNA: 3'- gCGgCGcuGCGCCGGCUCAGaa-------CGCG- -5' |
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7008 | 5' | -60.6 | NC_001875.2 | + | 56693 | 0.66 | 0.699539 |
Target: 5'- cCGCUGUGcaACGguUGGCCGAGgcc-GCGCg -3' miRNA: 3'- -GCGGCGC--UGC--GCCGGCUCagaaCGCG- -5' |
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7008 | 5' | -60.6 | NC_001875.2 | + | 49996 | 0.66 | 0.699539 |
Target: 5'- aCGCgGCGcuuguCGCGGuuGGGgc--GCGCg -3' miRNA: 3'- -GCGgCGCu----GCGCCggCUCagaaCGCG- -5' |
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7008 | 5' | -60.6 | NC_001875.2 | + | 43813 | 0.66 | 0.699539 |
Target: 5'- gGCUGCuGCGCGGgCG---UUUGCGCg -3' miRNA: 3'- gCGGCGcUGCGCCgGCucaGAACGCG- -5' |
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7008 | 5' | -60.6 | NC_001875.2 | + | 43759 | 0.66 | 0.699539 |
Target: 5'- gGCUGCuGCGCGGgCG---UUUGCGCa -3' miRNA: 3'- gCGGCGcUGCGCCgGCucaGAACGCG- -5' |
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7008 | 5' | -60.6 | NC_001875.2 | + | 68894 | 0.66 | 0.699539 |
Target: 5'- aCGCCGCGuccgGCGaguGUCGAGUCaacgagcUGUGCg -3' miRNA: 3'- -GCGGCGCug--CGC---CGGCUCAGa------ACGCG- -5' |
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7008 | 5' | -60.6 | NC_001875.2 | + | 113536 | 0.66 | 0.696614 |
Target: 5'- aGCgGCGGCGgGGCCaauaagcgcgcgaaGcGGcCUUGUGCg -3' miRNA: 3'- gCGgCGCUGCgCCGG--------------C-UCaGAACGCG- -5' |
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7008 | 5' | -60.6 | NC_001875.2 | + | 58785 | 0.66 | 0.689773 |
Target: 5'- uGUCGCGGCGCaaaacagcGCCGAGUuggcccagCUgcacgcggaaaUGCGCg -3' miRNA: 3'- gCGGCGCUGCGc-------CGGCUCA--------GA-----------ACGCG- -5' |
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7008 | 5' | -60.6 | NC_001875.2 | + | 73607 | 0.66 | 0.689773 |
Target: 5'- uGCgGCGAUgGgGGCCGAcGUUUUGauagaGCa -3' miRNA: 3'- gCGgCGCUG-CgCCGGCU-CAGAACg----CG- -5' |
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7008 | 5' | -60.6 | NC_001875.2 | + | 1027 | 0.66 | 0.689773 |
Target: 5'- aGCgCGUGGCGgGGCCcGAggcgcacagcGUUggGCGCa -3' miRNA: 3'- gCG-GCGCUGCgCCGG-CU----------CAGaaCGCG- -5' |
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7008 | 5' | -60.6 | NC_001875.2 | + | 39326 | 0.66 | 0.688794 |
Target: 5'- gCGCCG-GGCGCGcacgagcGCCc-GUUUUGCGCc -3' miRNA: 3'- -GCGGCgCUGCGC-------CGGcuCAGAACGCG- -5' |
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7008 | 5' | -60.6 | NC_001875.2 | + | 49931 | 0.66 | 0.688794 |
Target: 5'- aGCCGCG-CGCGcuaaucaGCUGGucGUCggagcUGCGCg -3' miRNA: 3'- gCGGCGCuGCGC-------CGGCU--CAGa----ACGCG- -5' |
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7008 | 5' | -60.6 | NC_001875.2 | + | 130676 | 0.66 | 0.688794 |
Target: 5'- uGCCGCGACGacgccucUGGCUGGuccgCUUGCa- -3' miRNA: 3'- gCGGCGCUGC-------GCCGGCUca--GAACGcg -5' |
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7008 | 5' | -60.6 | NC_001875.2 | + | 105210 | 0.66 | 0.686834 |
Target: 5'- uCGCCGUGGCGCccucgucaugcuugGGCgGccuGUCaugGCGCc -3' miRNA: 3'- -GCGGCGCUGCG--------------CCGgCu--CAGaa-CGCG- -5' |
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7008 | 5' | -60.6 | NC_001875.2 | + | 110705 | 0.66 | 0.679962 |
Target: 5'- gCGCCGCGuuCGUGGCUuucgcaacgGAGaacgCgggGCGCg -3' miRNA: 3'- -GCGGCGCu-GCGCCGG---------CUCa---Gaa-CGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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