miRNA display CGI


Results 21 - 40 of 141 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7009 3' -57.1 NC_001875.2 + 72730 0.66 0.834348
Target:  5'- uUGCGcgUCGgCCAGCGacGCCGUcaGCCu -3'
miRNA:   3'- cAUGCaaAGCgGGUCGU--CGGCG--UGGc -5'
7009 3' -57.1 NC_001875.2 + 98634 0.66 0.825926
Target:  5'- -cGCGUguuuuUUC-CCCGGCgagGGCCGCugCa -3'
miRNA:   3'- caUGCA-----AAGcGGGUCG---UCGGCGugGc -5'
7009 3' -57.1 NC_001875.2 + 55123 0.66 0.825926
Target:  5'- -cGCGUcaccgaCGCUCAGCgcgaccgacGGCgGCACCGg -3'
miRNA:   3'- caUGCAaa----GCGGGUCG---------UCGgCGUGGC- -5'
7009 3' -57.1 NC_001875.2 + 27142 0.66 0.825926
Target:  5'- --cUGUUuagcUCGUCCAGCuuggucGCCGCugCGu -3'
miRNA:   3'- cauGCAA----AGCGGGUCGu-----CGGCGugGC- -5'
7009 3' -57.1 NC_001875.2 + 89236 0.66 0.825926
Target:  5'- uUGCGUguuggcggUGCCCAGC-GCCGaGCUGa -3'
miRNA:   3'- cAUGCAaa------GCGGGUCGuCGGCgUGGC- -5'
7009 3' -57.1 NC_001875.2 + 84193 0.66 0.817326
Target:  5'- nGUGCGUUUgCGCaaCAGCugccgguaguagGGCCGCGCgCGc -3'
miRNA:   3'- -CAUGCAAA-GCGg-GUCG------------UCGGCGUG-GC- -5'
7009 3' -57.1 NC_001875.2 + 129006 0.66 0.812084
Target:  5'- -aACuaUUCGCCCAGCuacucgccaacgucGCCGCGCUc -3'
miRNA:   3'- caUGcaAAGCGGGUCGu-------------CGGCGUGGc -5'
7009 3' -57.1 NC_001875.2 + 88918 0.66 0.808556
Target:  5'- -cACGUUUgacugcgaCGCCCAcggcauGCGGCUGCACa- -3'
miRNA:   3'- caUGCAAA--------GCGGGU------CGUCGGCGUGgc -5'
7009 3' -57.1 NC_001875.2 + 21153 0.66 0.808556
Target:  5'- -cGCGg--CGCCCuccGCGGCCGCuucuuuUCGg -3'
miRNA:   3'- caUGCaaaGCGGGu--CGUCGGCGu-----GGC- -5'
7009 3' -57.1 NC_001875.2 + 79898 0.66 0.808556
Target:  5'- -cACGUcgCGCCCaaaguAGC-GCCGCACg- -3'
miRNA:   3'- caUGCAaaGCGGG-----UCGuCGGCGUGgc -5'
7009 3' -57.1 NC_001875.2 + 10333 0.66 0.80767
Target:  5'- --cUGUUUCGCCCcGC-GCCcgugauucaaauuGCGCCGg -3'
miRNA:   3'- cauGCAAAGCGGGuCGuCGG-------------CGUGGC- -5'
7009 3' -57.1 NC_001875.2 + 91598 0.66 0.805002
Target:  5'- -aGCGUUUCuugcacaCCCGGCucuugggcaauuuGCUGCGCCGa -3'
miRNA:   3'- caUGCAAAGc------GGGUCGu------------CGGCGUGGC- -5'
7009 3' -57.1 NC_001875.2 + 13799 0.67 0.799624
Target:  5'- cGUGCGggUgGCgCGGCGuugccGUCGCACUGg -3'
miRNA:   3'- -CAUGCaaAgCGgGUCGU-----CGGCGUGGC- -5'
7009 3' -57.1 NC_001875.2 + 72694 0.67 0.799624
Target:  5'- -cAgGUUUUGCUCcGCGGUgCGCGCCGu -3'
miRNA:   3'- caUgCAAAGCGGGuCGUCG-GCGUGGC- -5'
7009 3' -57.1 NC_001875.2 + 58153 0.67 0.798723
Target:  5'- -------cCGCCgCAGCAGCCGCcgcagcaGCCGc -3'
miRNA:   3'- caugcaaaGCGG-GUCGUCGGCG-------UGGC- -5'
7009 3' -57.1 NC_001875.2 + 64892 0.67 0.79054
Target:  5'- gGU-CGUcgaCGCUCAGCuGUCGCGCCu -3'
miRNA:   3'- -CAuGCAaa-GCGGGUCGuCGGCGUGGc -5'
7009 3' -57.1 NC_001875.2 + 320 0.67 0.79054
Target:  5'- uUGCGc--CGCuuCCAGCcGCUGCACCGc -3'
miRNA:   3'- cAUGCaaaGCG--GGUCGuCGGCGUGGC- -5'
7009 3' -57.1 NC_001875.2 + 60111 0.67 0.79054
Target:  5'- -gACGUgUCGCUCGuuuacGCuGCCGCAgCGg -3'
miRNA:   3'- caUGCAaAGCGGGU-----CGuCGGCGUgGC- -5'
7009 3' -57.1 NC_001875.2 + 100804 0.67 0.79054
Target:  5'- cGUACGgccgCGCCgGGuCGGCCGCuuCa -3'
miRNA:   3'- -CAUGCaaa-GCGGgUC-GUCGGCGugGc -5'
7009 3' -57.1 NC_001875.2 + 121428 0.67 0.79054
Target:  5'- uGUugGguagUGCagCGGguGCCGCGCCa -3'
miRNA:   3'- -CAugCaaa-GCGg-GUCguCGGCGUGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.