Results 21 - 40 of 67 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7009 | 5' | -56.8 | NC_001875.2 | + | 32786 | 0.67 | 0.771426 |
Target: 5'- cGCGGCGUgggcgggcGCCgCGCCGGCAagcucgGCGa-- -3' miRNA: 3'- aCGCUGCA--------CGG-GUGGUCGUa-----CGCaaa -5' |
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7009 | 5' | -56.8 | NC_001875.2 | + | 33971 | 0.67 | 0.761771 |
Target: 5'- gUGCGGCGcgcaGCCgACCGGCAcguUGCa--- -3' miRNA: 3'- -ACGCUGCa---CGGgUGGUCGU---ACGcaaa -5' |
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7009 | 5' | -56.8 | NC_001875.2 | + | 37118 | 0.67 | 0.751996 |
Target: 5'- cGCGGC--GCCgCGCCGGCGuuUGCGUc- -3' miRNA: 3'- aCGCUGcaCGG-GUGGUCGU--ACGCAaa -5' |
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7009 | 5' | -56.8 | NC_001875.2 | + | 88525 | 0.67 | 0.751996 |
Target: 5'- aGCGGCacGCCCGCCgcGGCGU-CGUUUa -3' miRNA: 3'- aCGCUGcaCGGGUGG--UCGUAcGCAAA- -5' |
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7009 | 5' | -56.8 | NC_001875.2 | + | 44010 | 0.67 | 0.742111 |
Target: 5'- gGCGccgugcccaGCGUGCUguaccgcagCACCGGCAUcGCGUUUu -3' miRNA: 3'- aCGC---------UGCACGG---------GUGGUCGUA-CGCAAA- -5' |
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7009 | 5' | -56.8 | NC_001875.2 | + | 5847 | 0.67 | 0.742111 |
Target: 5'- cGCGcccGCGUaGCagugCACCAGCAcGCGUUUg -3' miRNA: 3'- aCGC---UGCA-CGg---GUGGUCGUaCGCAAA- -5' |
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7009 | 5' | -56.8 | NC_001875.2 | + | 43313 | 0.67 | 0.742111 |
Target: 5'- aGCGGCGcGCgCGCgGGUcgGCGUg- -3' miRNA: 3'- aCGCUGCaCGgGUGgUCGuaCGCAaa -5' |
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7009 | 5' | -56.8 | NC_001875.2 | + | 4525 | 0.67 | 0.742111 |
Target: 5'- aGCGGCGca-CCGCCGGC-UGCGg-- -3' miRNA: 3'- aCGCUGCacgGGUGGUCGuACGCaaa -5' |
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7009 | 5' | -56.8 | NC_001875.2 | + | 18690 | 0.67 | 0.742111 |
Target: 5'- -aCGGCGcGCgCGCCGGCGUGCa--- -3' miRNA: 3'- acGCUGCaCGgGUGGUCGUACGcaaa -5' |
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7009 | 5' | -56.8 | NC_001875.2 | + | 90501 | 0.67 | 0.742111 |
Target: 5'- cUGCGcGCG-GCCCACUuGCAcgGCGUa- -3' miRNA: 3'- -ACGC-UGCaCGGGUGGuCGUa-CGCAaa -5' |
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7009 | 5' | -56.8 | NC_001875.2 | + | 86120 | 0.67 | 0.732126 |
Target: 5'- cGCGuggACGUGgCCAUCGGCAgUGCGc-- -3' miRNA: 3'- aCGC---UGCACgGGUGGUCGU-ACGCaaa -5' |
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7009 | 5' | -56.8 | NC_001875.2 | + | 42867 | 0.67 | 0.732126 |
Target: 5'- cGCaGGCGcagGUCCGCCAGCGcaacGCGUUc -3' miRNA: 3'- aCG-CUGCa--CGGGUGGUCGUa---CGCAAa -5' |
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7009 | 5' | -56.8 | NC_001875.2 | + | 18183 | 0.68 | 0.72205 |
Target: 5'- cUGUGGCgGUGCCgGCgGGCGUagGCGUg- -3' miRNA: 3'- -ACGCUG-CACGGgUGgUCGUA--CGCAaa -5' |
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7009 | 5' | -56.8 | NC_001875.2 | + | 118635 | 0.68 | 0.711893 |
Target: 5'- aGCcACGUGCCgGCCgaGGCAaagGCGUUc -3' miRNA: 3'- aCGcUGCACGGgUGG--UCGUa--CGCAAa -5' |
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7009 | 5' | -56.8 | NC_001875.2 | + | 110811 | 0.68 | 0.711893 |
Target: 5'- --aGGCGUGCCCguggACCAGCAgagacuuauuuaUGCGg-- -3' miRNA: 3'- acgCUGCACGGG----UGGUCGU------------ACGCaaa -5' |
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7009 | 5' | -56.8 | NC_001875.2 | + | 19124 | 0.68 | 0.711893 |
Target: 5'- cGCGACGcGCCUACCAcgGCG-GCGc-- -3' miRNA: 3'- aCGCUGCaCGGGUGGU--CGUaCGCaaa -5' |
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7009 | 5' | -56.8 | NC_001875.2 | + | 41428 | 0.68 | 0.701666 |
Target: 5'- --aGugGUGCCCAUgAGCGUgauaaacaacGCGUUUa -3' miRNA: 3'- acgCugCACGGGUGgUCGUA----------CGCAAA- -5' |
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7009 | 5' | -56.8 | NC_001875.2 | + | 21199 | 0.68 | 0.701666 |
Target: 5'- cGCGgcACGgccaGCgCCACCAGguUGUGUUUa -3' miRNA: 3'- aCGC--UGCa---CG-GGUGGUCguACGCAAA- -5' |
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7009 | 5' | -56.8 | NC_001875.2 | + | 66128 | 0.68 | 0.701666 |
Target: 5'- gGCGGCGccGCCCGCggaacagugguCGGCcgGCGUg- -3' miRNA: 3'- aCGCUGCa-CGGGUG-----------GUCGuaCGCAaa -5' |
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7009 | 5' | -56.8 | NC_001875.2 | + | 98805 | 0.68 | 0.701666 |
Target: 5'- cGCGGCGcggcGCCCGCCGcGC-UGCGc-- -3' miRNA: 3'- aCGCUGCa---CGGGUGGU-CGuACGCaaa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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