miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7010 5' -56.6 NC_001875.2 + 42557 0.66 0.88769
Target:  5'- gGUgGUCGCgccCAgccgcGCCaGGUCGGCGc -3'
miRNA:   3'- gCAgCAGCGa--GUaa---CGGgCCAGUCGC- -5'
7010 5' -56.6 NC_001875.2 + 67865 0.66 0.880768
Target:  5'- gGUgCGUCGCcagauucugguUCA--GCgCGGUCGGCGa -3'
miRNA:   3'- gCA-GCAGCG-----------AGUaaCGgGCCAGUCGC- -5'
7010 5' -56.6 NC_001875.2 + 369 0.66 0.866269
Target:  5'- aCGUUGgccgCGCgauugUGCUCGGcCAGCGu -3'
miRNA:   3'- -GCAGCa---GCGagua-ACGGGCCaGUCGC- -5'
7010 5' -56.6 NC_001875.2 + 102419 0.66 0.866269
Target:  5'- gCGUCG-CGCUCgccGUUGCCgagcgccgGGUUGGCGc -3'
miRNA:   3'- -GCAGCaGCGAG---UAACGGg-------CCAGUCGC- -5'
7010 5' -56.6 NC_001875.2 + 96441 0.67 0.83481
Target:  5'- uCGgCGUCGCUCGcgcgcGCCaCGGaCAGCa -3'
miRNA:   3'- -GCaGCAGCGAGUaa---CGG-GCCaGUCGc -5'
7010 5' -56.6 NC_001875.2 + 55869 0.67 0.826469
Target:  5'- gGUCGUUGCUgagccccucgcUGUgccgaugGCCgCGGUCAGCu -3'
miRNA:   3'- gCAGCAGCGA-----------GUAa------CGG-GCCAGUCGc -5'
7010 5' -56.6 NC_001875.2 + 2738 0.67 0.826469
Target:  5'- uCGUCGUCGCugUCAUUGaaaGGcgcCAGCGg -3'
miRNA:   3'- -GCAGCAGCG--AGUAACgggCCa--GUCGC- -5'
7010 5' -56.6 NC_001875.2 + 83737 0.67 0.817954
Target:  5'- uCGUUGUaCGCguuugUGCCCaacGUCAGCGa -3'
miRNA:   3'- -GCAGCA-GCGagua-ACGGGc--CAGUCGC- -5'
7010 5' -56.6 NC_001875.2 + 54662 0.68 0.800427
Target:  5'- aCGcCGUCGC-CGUUGUCgGGcCAGUa -3'
miRNA:   3'- -GCaGCAGCGaGUAACGGgCCaGUCGc -5'
7010 5' -56.6 NC_001875.2 + 21190 0.68 0.782295
Target:  5'- uCGUCGUCGCgcg--GCaCGGcCAGCGc -3'
miRNA:   3'- -GCAGCAGCGaguaaCGgGCCaGUCGC- -5'
7010 5' -56.6 NC_001875.2 + 6376 0.68 0.773023
Target:  5'- uCGUCGUCGggCAccgcgcgGCCCGG-CAcGCGg -3'
miRNA:   3'- -GCAGCAGCgaGUaa-----CGGGCCaGU-CGC- -5'
7010 5' -56.6 NC_001875.2 + 121276 0.68 0.763627
Target:  5'- aCGUUGUCGCgCAgcUGCCUgauGGUgGGCGu -3'
miRNA:   3'- -GCAGCAGCGaGUa-ACGGG---CCAgUCGC- -5'
7010 5' -56.6 NC_001875.2 + 54040 0.69 0.715088
Target:  5'- -cUCGUCGUUCucggUGCCgaacacgaGGUCGGCGc -3'
miRNA:   3'- gcAGCAGCGAGua--ACGGg-------CCAGUCGC- -5'
7010 5' -56.6 NC_001875.2 + 66100 0.71 0.60364
Target:  5'- ---gGUCGCUCGUgaUGCCCGuGUaCAGCu -3'
miRNA:   3'- gcagCAGCGAGUA--ACGGGC-CA-GUCGc -5'
7010 5' -56.6 NC_001875.2 + 23735 0.71 0.592463
Target:  5'- aCGUUGUCGCUCAUguguaugGCCgugagugCGGUgCAGCc -3'
miRNA:   3'- -GCAGCAGCGAGUAa------CGG-------GCCA-GUCGc -5'
7010 5' -56.6 NC_001875.2 + 81169 0.71 0.583345
Target:  5'- gGUUGUCGCUC-UUGaaaaaCCGGUCuAGCu -3'
miRNA:   3'- gCAGCAGCGAGuAACg----GGCCAG-UCGc -5'
7010 5' -56.6 NC_001875.2 + 33566 0.73 0.47549
Target:  5'- gGUCGcCGCggggCAccaUGCCCGaGUCGGCGa -3'
miRNA:   3'- gCAGCaGCGa---GUa--ACGGGC-CAGUCGC- -5'
7010 5' -56.6 NC_001875.2 + 113365 1.09 0.002249
Target:  5'- uCGUCGUCGCUCAUUGCCCGGUCAGCGg -3'
miRNA:   3'- -GCAGCAGCGAGUAACGGGCCAGUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.