miRNA display CGI


Results 21 - 40 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7011 3' -54 NC_001875.2 + 65769 0.66 0.921803
Target:  5'- gCCGGCGGcugGGCGAGCAcGCgCGCgGc--- -3'
miRNA:   3'- -GGUCGCU---UUGCUCGU-CG-GCGgCaauu -5'
7011 3' -54 NC_001875.2 + 51229 0.66 0.921803
Target:  5'- uUAGCGAcuUGAGCAG-CGCCacGUUGAu -3'
miRNA:   3'- gGUCGCUuuGCUCGUCgGCGG--CAAUU- -5'
7011 3' -54 NC_001875.2 + 39645 0.67 0.915965
Target:  5'- gCAGCGAAccgcgcGCGAGUuugGGCCGgCGg--- -3'
miRNA:   3'- gGUCGCUU------UGCUCG---UCGGCgGCaauu -5'
7011 3' -54 NC_001875.2 + 129077 0.67 0.909875
Target:  5'- aCAGCcugcccGgGAGCAGCCGCUGg--- -3'
miRNA:   3'- gGUCGcuu---UgCUCGUCGGCGGCaauu -5'
7011 3' -54 NC_001875.2 + 11915 0.67 0.909875
Target:  5'- gCGGCGAGcagguguuuuGCGcGCGGCgCGCCGa--- -3'
miRNA:   3'- gGUCGCUU----------UGCuCGUCG-GCGGCaauu -5'
7011 3' -54 NC_001875.2 + 111880 0.67 0.909875
Target:  5'- aCGGCGAGGCGc-CGGCCGgaCCGUg-- -3'
miRNA:   3'- gGUCGCUUUGCucGUCGGC--GGCAauu -5'
7011 3' -54 NC_001875.2 + 66681 0.67 0.909875
Target:  5'- gCAGCGGGAUGGGaauGCUGCaCGUg-- -3'
miRNA:   3'- gGUCGCUUUGCUCgu-CGGCG-GCAauu -5'
7011 3' -54 NC_001875.2 + 83589 0.67 0.909875
Target:  5'- cCCGGCG----GGGC-GCCGCCGUa-- -3'
miRNA:   3'- -GGUCGCuuugCUCGuCGGCGGCAauu -5'
7011 3' -54 NC_001875.2 + 99908 0.67 0.909875
Target:  5'- uCgAGCGcAACGAGCGGgCCGCgCGc--- -3'
miRNA:   3'- -GgUCGCuUUGCUCGUC-GGCG-GCaauu -5'
7011 3' -54 NC_001875.2 + 12842 0.67 0.909252
Target:  5'- cCCGGCGGcgcCGGcuagcacGCAGCCGUgGUUGGu -3'
miRNA:   3'- -GGUCGCUuu-GCU-------CGUCGGCGgCAAUU- -5'
7011 3' -54 NC_001875.2 + 58149 0.67 0.903534
Target:  5'- gCAGCcgc-CGcAGCAGCCGCCGc--- -3'
miRNA:   3'- gGUCGcuuuGC-UCGUCGGCGGCaauu -5'
7011 3' -54 NC_001875.2 + 62477 0.67 0.903534
Target:  5'- aCGGCGcgcAGCGGGCGcacGCCGCUGa--- -3'
miRNA:   3'- gGUCGCu--UUGCUCGU---CGGCGGCaauu -5'
7011 3' -54 NC_001875.2 + 8255 0.67 0.903534
Target:  5'- gCCGGCGAAucuUGuGC--CCGCCGUUGg -3'
miRNA:   3'- -GGUCGCUUu--GCuCGucGGCGGCAAUu -5'
7011 3' -54 NC_001875.2 + 58203 0.67 0.903534
Target:  5'- gCAGCcgc-CGcAGCAGCCGCCGc--- -3'
miRNA:   3'- gGUCGcuuuGC-UCGUCGGCGGCaauu -5'
7011 3' -54 NC_001875.2 + 49517 0.67 0.903534
Target:  5'- cUCGGCGGAccGCGAcCAGUCGCUGg--- -3'
miRNA:   3'- -GGUCGCUU--UGCUcGUCGGCGGCaauu -5'
7011 3' -54 NC_001875.2 + 54804 0.67 0.896946
Target:  5'- aCUAGCaccGCGAcGCGGCUGCCGa--- -3'
miRNA:   3'- -GGUCGcuuUGCU-CGUCGGCGGCaauu -5'
7011 3' -54 NC_001875.2 + 123838 0.67 0.896946
Target:  5'- aCCAGCaGuuGCGcaauCAGCCGCCGg--- -3'
miRNA:   3'- -GGUCG-CuuUGCuc--GUCGGCGGCaauu -5'
7011 3' -54 NC_001875.2 + 64452 0.67 0.896273
Target:  5'- aCAGCGAggaggaauuggccGACGAGCcgguggacgAGUCGCgGUUGu -3'
miRNA:   3'- gGUCGCU-------------UUGCUCG---------UCGGCGgCAAUu -5'
7011 3' -54 NC_001875.2 + 96319 0.67 0.890112
Target:  5'- gCC-GCGuauauAACGcGCGGCCGcCCGUUGc -3'
miRNA:   3'- -GGuCGCu----UUGCuCGUCGGC-GGCAAUu -5'
7011 3' -54 NC_001875.2 + 7564 0.67 0.890112
Target:  5'- gCCGGCG-GACGAGCGGCacccCUGUUu- -3'
miRNA:   3'- -GGUCGCuUUGCUCGUCGgc--GGCAAuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.