miRNA display CGI


Results 21 - 40 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7011 5' -60 NC_001875.2 + 130049 0.67 0.667107
Target:  5'- -gCCGAcggaaauggcggcGGCGGCGGCGGcAUG-CUCGu -3'
miRNA:   3'- cgGGCU-------------UCGCCGCCGUCaUGCgGAGC- -5'
7011 5' -60 NC_001875.2 + 102986 0.67 0.659136
Target:  5'- uGCCCugcgggcacgugguGGCGuGCGGCaAGUGCGCUgCGg -3'
miRNA:   3'- -CGGGcu------------UCGC-CGCCG-UCAUGCGGaGC- -5'
7011 5' -60 NC_001875.2 + 63258 0.67 0.658139
Target:  5'- gGCUCGGcggccAGCGGCGccacGCGGUGCGCgaCc -3'
miRNA:   3'- -CGGGCU-----UCGCCGC----CGUCAUGCGgaGc -5'
7011 5' -60 NC_001875.2 + 65098 0.67 0.658139
Target:  5'- cGCUcaaCGAGGCGGCcaaGCAGcucaGCCUCGc -3'
miRNA:   3'- -CGG---GCUUCGCCGc--CGUCaug-CGGAGC- -5'
7011 5' -60 NC_001875.2 + 74946 0.67 0.658139
Target:  5'- -gCCGcuGCuGCGGCGGUACGaCCUg- -3'
miRNA:   3'- cgGGCuuCGcCGCCGUCAUGC-GGAgc -5'
7011 5' -60 NC_001875.2 + 13722 0.67 0.63816
Target:  5'- cGCCCGccuuGGCGGCaauGCGGuUGCGCaggCGg -3'
miRNA:   3'- -CGGGCu---UCGCCGc--CGUC-AUGCGga-GC- -5'
7011 5' -60 NC_001875.2 + 100609 0.67 0.63816
Target:  5'- cGCCgGccGCGGCcGCuGUuuGCCUCGu -3'
miRNA:   3'- -CGGgCuuCGCCGcCGuCAugCGGAGC- -5'
7011 5' -60 NC_001875.2 + 77617 0.67 0.63816
Target:  5'- aGCUCGAGuacauCGGCGGCA--ACGgCUCGg -3'
miRNA:   3'- -CGGGCUUc----GCCGCCGUcaUGCgGAGC- -5'
7011 5' -60 NC_001875.2 + 82052 0.67 0.63816
Target:  5'- uGUUgGggGCGGCGcGCAGUACaGCaC-CGa -3'
miRNA:   3'- -CGGgCuuCGCCGC-CGUCAUG-CG-GaGC- -5'
7011 5' -60 NC_001875.2 + 48384 0.68 0.618163
Target:  5'- cGUCCGAcGCGGCGaCAGgugcCGgCUCGg -3'
miRNA:   3'- -CGGGCUuCGCCGCcGUCau--GCgGAGC- -5'
7011 5' -60 NC_001875.2 + 113603 0.68 0.618163
Target:  5'- cGUUCGAGuCGGCGGCGGgcCGCggCGg -3'
miRNA:   3'- -CGGGCUUcGCCGCCGUCauGCGgaGC- -5'
7011 5' -60 NC_001875.2 + 120682 0.68 0.618163
Target:  5'- -gUCGAuGC-GCGcGCGGUACGCCUCc -3'
miRNA:   3'- cgGGCUuCGcCGC-CGUCAUGCGGAGc -5'
7011 5' -60 NC_001875.2 + 130097 0.68 0.617164
Target:  5'- -gCCGAcggaaauGGCGGCGGCGGcgGCGCgaCc -3'
miRNA:   3'- cgGGCU-------UCGCCGCCGUCa-UGCGgaGc -5'
7011 5' -60 NC_001875.2 + 32558 0.68 0.608177
Target:  5'- cGCCgaGGAGCGGCugcaGCAGUGCcgcgcgcaCCUCGa -3'
miRNA:   3'- -CGGg-CUUCGCCGc---CGUCAUGc-------GGAGC- -5'
7011 5' -60 NC_001875.2 + 21364 0.68 0.598207
Target:  5'- uGCuuGAcGCGGUacuuGCGGUugGCCUUa -3'
miRNA:   3'- -CGggCUuCGCCGc---CGUCAugCGGAGc -5'
7011 5' -60 NC_001875.2 + 54360 0.68 0.598207
Target:  5'- cGCCCGgcGCguugGGCGaGCGc-ACGCCUUGg -3'
miRNA:   3'- -CGGGCuuCG----CCGC-CGUcaUGCGGAGC- -5'
7011 5' -60 NC_001875.2 + 85874 0.68 0.598207
Target:  5'- -gCCGcAGCGGCGGCucUGCGCUaUCGc -3'
miRNA:   3'- cgGGCuUCGCCGCCGucAUGCGG-AGC- -5'
7011 5' -60 NC_001875.2 + 83811 0.68 0.588261
Target:  5'- uGCCUGuGGGCGGCGGCcacGUGgcCGCCa-- -3'
miRNA:   3'- -CGGGC-UUCGCCGCCGu--CAU--GCGGagc -5'
7011 5' -60 NC_001875.2 + 111970 0.68 0.588261
Target:  5'- uUCUGuGGUGGUGGCAcaccGUuCGCCUCGa -3'
miRNA:   3'- cGGGCuUCGCCGCCGU----CAuGCGGAGC- -5'
7011 5' -60 NC_001875.2 + 110680 0.68 0.588261
Target:  5'- uGCCgaaaaGAAGCGGCcGCGGaggGCGCCgCGu -3'
miRNA:   3'- -CGGg----CUUCGCCGcCGUCa--UGCGGaGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.