miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7012 5' -57.8 NC_001875.2 + 114150 1.09 0.001613
Target:  5'- cAGCUCAUGCUGUCGCAGCCGCGUCGGc -3'
miRNA:   3'- -UCGAGUACGACAGCGUCGGCGCAGCC- -5'
7012 5' -57.8 NC_001875.2 + 45462 0.68 0.715088
Target:  5'- cGCUCG-GCgccCGCAGCCGCG-CGu -3'
miRNA:   3'- uCGAGUaCGacaGCGUCGGCGCaGCc -5'
7012 5' -57.8 NC_001875.2 + 81351 0.67 0.723988
Target:  5'- cGCUgGUGCcGcgCGCacgcgccGGCCGCGUCGc -3'
miRNA:   3'- uCGAgUACGaCa-GCG-------UCGGCGCAGCc -5'
7012 5' -57.8 NC_001875.2 + 33868 0.67 0.734778
Target:  5'- cGCUCAUGUUGcuagCGUGGCCgaaaugacuaGCGccUCGGg -3'
miRNA:   3'- uCGAGUACGACa---GCGUCGG----------CGC--AGCC- -5'
7012 5' -57.8 NC_001875.2 + 117258 0.67 0.744495
Target:  5'- cGUUCAguCUGUCGCuGCCGCGgcCGa -3'
miRNA:   3'- uCGAGUacGACAGCGuCGGCGCa-GCc -5'
7012 5' -57.8 NC_001875.2 + 29992 0.66 0.799534
Target:  5'- aAGCUCGcuCUaGUCGCGGCCguuauuaggacguGCGcCGGa -3'
miRNA:   3'- -UCGAGUacGA-CAGCGUCGG-------------CGCaGCC- -5'
7012 5' -57.8 NC_001875.2 + 38544 0.66 0.800427
Target:  5'- cAGCUCGUgGCcGg-GUuGCUGCGUCGGc -3'
miRNA:   3'- -UCGAGUA-CGaCagCGuCGGCGCAGCC- -5'
7012 5' -57.8 NC_001875.2 + 27147 0.66 0.80927
Target:  5'- uAGCUCGUccaGCUugGUCGCcGCUGCGUa-- -3'
miRNA:   3'- -UCGAGUA---CGA--CAGCGuCGGCGCAgcc -5'
7012 5' -57.8 NC_001875.2 + 50336 0.66 0.817954
Target:  5'- gAGCUgGUGgUGUCgGCGucGuuGgCGUCGGg -3'
miRNA:   3'- -UCGAgUACgACAG-CGU--CggC-GCAGCC- -5'
7012 5' -57.8 NC_001875.2 + 38671 0.68 0.705132
Target:  5'- uGCUCAUGUccaucaagUGCGGCgGCGUgGGg -3'
miRNA:   3'- uCGAGUACGaca-----GCGUCGgCGCAgCC- -5'
7012 5' -57.8 NC_001875.2 + 47901 0.69 0.654614
Target:  5'- gAGUUCGcgcgguggUGCUGcCGCAGCaCGCGUaCGu -3'
miRNA:   3'- -UCGAGU--------ACGACaGCGUCG-GCGCA-GCc -5'
7012 5' -57.8 NC_001875.2 + 90880 0.77 0.25682
Target:  5'- cGaaCGUGCUGgcCGgGGCCGCGUCGGg -3'
miRNA:   3'- uCgaGUACGACa-GCgUCGGCGCAGCC- -5'
7012 5' -57.8 NC_001875.2 + 71127 0.74 0.378499
Target:  5'- uGCUgugGCUGggcggccucagCGCGGCCGCGUUGGg -3'
miRNA:   3'- uCGAguaCGACa----------GCGUCGGCGCAGCC- -5'
7012 5' -57.8 NC_001875.2 + 64901 0.71 0.513736
Target:  5'- cGCUCA-GCUGUCGC-GCCuCGUUGa -3'
miRNA:   3'- uCGAGUaCGACAGCGuCGGcGCAGCc -5'
7012 5' -57.8 NC_001875.2 + 59931 0.71 0.513736
Target:  5'- cGCUCAucagUGCcgUGUCGCGGCUG-GUCGa -3'
miRNA:   3'- uCGAGU----ACG--ACAGCGUCGGCgCAGCc -5'
7012 5' -57.8 NC_001875.2 + 35067 0.71 0.543224
Target:  5'- uGCcCGUGCUGguUUGCGGCCGCaUCGa -3'
miRNA:   3'- uCGaGUACGAC--AGCGUCGGCGcAGCc -5'
7012 5' -57.8 NC_001875.2 + 77028 0.7 0.593478
Target:  5'- uGUUCggGCUcg-GCAGCCGCGUCGcGg -3'
miRNA:   3'- uCGAGuaCGAcagCGUCGGCGCAGC-C- -5'
7012 5' -57.8 NC_001875.2 + 41372 0.69 0.622999
Target:  5'- uGGCUCAUGCUaaaggaaGaCGCGGCCGuCGUUu- -3'
miRNA:   3'- -UCGAGUACGA-------CaGCGUCGGC-GCAGcc -5'
7012 5' -57.8 NC_001875.2 + 85800 0.69 0.638303
Target:  5'- cGUUCAUGUUGUgaagcauuuccgcggCGcCAGCUGCGUgGGc -3'
miRNA:   3'- uCGAGUACGACA---------------GC-GUCGGCGCAgCC- -5'
7012 5' -57.8 NC_001875.2 + 62593 0.66 0.817954
Target:  5'- cGGCcCGUGCcGUCGggcaagucggcaCAGCgCGCGUCGc -3'
miRNA:   3'- -UCGaGUACGaCAGC------------GUCG-GCGCAGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.