miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7013 3' -54.7 NC_001875.2 + 117221 1.09 0.00294
Target:  5'- aAGCCGUACUCGGGCGGCACAAAACUGg -3'
miRNA:   3'- -UCGGCAUGAGCCCGCCGUGUUUUGAC- -5'
7013 3' -54.7 NC_001875.2 + 131752 0.79 0.289663
Target:  5'- gGGCCGgcgGCggaUCGGGCGGCGCGucAUUGg -3'
miRNA:   3'- -UCGGCa--UG---AGCCCGCCGUGUuuUGAC- -5'
7013 3' -54.7 NC_001875.2 + 50868 0.73 0.562538
Target:  5'- cAGCUuuUGCUCGGGCGGCGCGGc---- -3'
miRNA:   3'- -UCGGc-AUGAGCCCGCCGUGUUuugac -5'
7013 3' -54.7 NC_001875.2 + 10652 0.73 0.57286
Target:  5'- uGCaGUACUUGGGCGGCG---GACUGc -3'
miRNA:   3'- uCGgCAUGAGCCCGCCGUguuUUGAC- -5'
7013 3' -54.7 NC_001875.2 + 116910 0.72 0.59363
Target:  5'- uAGCCGcGCgcggCGGGUGGCGCAcaauGACg- -3'
miRNA:   3'- -UCGGCaUGa---GCCCGCCGUGUu---UUGac -5'
7013 3' -54.7 NC_001875.2 + 125015 0.71 0.666831
Target:  5'- gGGCaCGUugUCGacGCGGCGCA--GCUGg -3'
miRNA:   3'- -UCG-GCAugAGCc-CGCCGUGUuuUGAC- -5'
7013 3' -54.7 NC_001875.2 + 3103 0.7 0.708201
Target:  5'- cGCCGggGCgCGGcucGCGGCGCAGAcCUGg -3'
miRNA:   3'- uCGGCa-UGaGCC---CGCCGUGUUUuGAC- -5'
7013 3' -54.7 NC_001875.2 + 104097 0.7 0.727512
Target:  5'- cAGcCCGUAUUUGGGCGGCcauauuuGCAAcGCg- -3'
miRNA:   3'- -UC-GGCAUGAGCCCGCCG-------UGUUuUGac -5'
7013 3' -54.7 NC_001875.2 + 82366 0.7 0.738553
Target:  5'- uGCaa-ACUCGGGCGcGCGCGGAACc- -3'
miRNA:   3'- uCGgcaUGAGCCCGC-CGUGUUUUGac -5'
7013 3' -54.7 NC_001875.2 + 111209 0.7 0.74849
Target:  5'- cGCCGUuuuuuguuGCUcaCGGGCgugGGCACGuAGCUGg -3'
miRNA:   3'- uCGGCA--------UGA--GCCCG---CCGUGUuUUGAC- -5'
7013 3' -54.7 NC_001875.2 + 131518 0.69 0.79637
Target:  5'- cGCgGUGCagCGGcuggaaGCGGCGCAAAGCg- -3'
miRNA:   3'- uCGgCAUGa-GCC------CGCCGUGUUUUGac -5'
7013 3' -54.7 NC_001875.2 + 28380 0.69 0.79637
Target:  5'- aGGUCGUACgUCGcGGCGuGCACGAcGCc- -3'
miRNA:   3'- -UCGGCAUG-AGC-CCGC-CGUGUUuUGac -5'
7013 3' -54.7 NC_001875.2 + 62593 0.69 0.805518
Target:  5'- cGGcCCGUGCcgUCGGGCaagucGGCACAGcGCg- -3'
miRNA:   3'- -UC-GGCAUG--AGCCCG-----CCGUGUUuUGac -5'
7013 3' -54.7 NC_001875.2 + 37038 0.68 0.831939
Target:  5'- uGGCCGUGCaCGGcGCGuGCACGcgcgcGGACg- -3'
miRNA:   3'- -UCGGCAUGaGCC-CGC-CGUGU-----UUUGac -5'
7013 3' -54.7 NC_001875.2 + 130165 0.68 0.831939
Target:  5'- gGGCCGcgauuuuaaaUGCUCGGGUuuaggaGGCACGggAGGCUu -3'
miRNA:   3'- -UCGGC----------AUGAGCCCG------CCGUGU--UUUGAc -5'
7013 3' -54.7 NC_001875.2 + 26007 0.68 0.840377
Target:  5'- uGGCCGUcgGCgccUGGGCGGUcaGCAu-GCUGu -3'
miRNA:   3'- -UCGGCA--UGa--GCCCGCCG--UGUuuUGAC- -5'
7013 3' -54.7 NC_001875.2 + 105211 0.68 0.846165
Target:  5'- cGCCGUggcgcccucgucauGCUUGGGCGGCcuguCAugGCg- -3'
miRNA:   3'- uCGGCA--------------UGAGCCCGCCGu---GUuuUGac -5'
7013 3' -54.7 NC_001875.2 + 31604 0.68 0.848616
Target:  5'- cGCCGUGCcgUGGGCGGacCACAu-GCg- -3'
miRNA:   3'- uCGGCAUGa-GCCCGCC--GUGUuuUGac -5'
7013 3' -54.7 NC_001875.2 + 113128 0.67 0.86447
Target:  5'- cGCUGUugUUGuGCGGCACGuuAAugUGc -3'
miRNA:   3'- uCGGCAugAGCcCGCCGUGU--UUugAC- -5'
7013 3' -54.7 NC_001875.2 + 117361 0.67 0.86447
Target:  5'- gGGCCGgcugGCcgUCGGGgaGGCGCcGAGCUu -3'
miRNA:   3'- -UCGGCa---UG--AGCCCg-CCGUGuUUUGAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.