Results 1 - 20 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7014 | 3' | -54.4 | NC_001875.2 | + | 2058 | 0.68 | 0.860859 |
Target: 5'- aACCCGCagACGGUgcUCCGGCAACcGAc -3' miRNA: 3'- -UGGGCG--UGCUAacAGGCUGUUGcCUc -5' |
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7014 | 3' | -54.4 | NC_001875.2 | + | 2948 | 0.67 | 0.921243 |
Target: 5'- cGCUgGCGCGcUUGcUCGGCAGCGGuGu -3' miRNA: 3'- -UGGgCGUGCuAACaGGCUGUUGCCuC- -5' |
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7014 | 3' | -54.4 | NC_001875.2 | + | 5369 | 0.79 | 0.334531 |
Target: 5'- cACCCGCugGAcgUGUUCGGugaGACGGAGg -3' miRNA: 3'- -UGGGCGugCUa-ACAGGCUg--UUGCCUC- -5' |
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7014 | 3' | -54.4 | NC_001875.2 | + | 19951 | 0.68 | 0.853024 |
Target: 5'- gGCCgGCGCGAcgGUCCGGcCGGCGc-- -3' miRNA: 3'- -UGGgCGUGCUaaCAGGCU-GUUGCcuc -5' |
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7014 | 3' | -54.4 | NC_001875.2 | + | 31575 | 0.67 | 0.903232 |
Target: 5'- cGCgUGCACGAguuaaggguggUGUCCGGCGccgugccguggGCGGAc -3' miRNA: 3'- -UGgGCGUGCUa----------ACAGGCUGU-----------UGCCUc -5' |
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7014 | 3' | -54.4 | NC_001875.2 | + | 38057 | 0.67 | 0.915482 |
Target: 5'- cGCCCGCGCGAcUUGcgCCGuaAACGGc- -3' miRNA: 3'- -UGGGCGUGCU-AACa-GGCugUUGCCuc -5' |
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7014 | 3' | -54.4 | NC_001875.2 | + | 39651 | 0.67 | 0.903232 |
Target: 5'- aACCgCGCGCGAguUUGggCCGGCGGCGc-- -3' miRNA: 3'- -UGG-GCGUGCU--AACa-GGCUGUUGCcuc -5' |
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7014 | 3' | -54.4 | NC_001875.2 | + | 40153 | 0.66 | 0.946376 |
Target: 5'- gGCaCCGCACGg----CCGGCAACGcGAu -3' miRNA: 3'- -UG-GGCGUGCuaacaGGCUGUUGC-CUc -5' |
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7014 | 3' | -54.4 | NC_001875.2 | + | 42899 | 0.67 | 0.903232 |
Target: 5'- uCCCGC-CGAUUGUCCGuuuCAGacUGGuGu -3' miRNA: 3'- uGGGCGuGCUAACAGGCu--GUU--GCCuC- -5' |
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7014 | 3' | -54.4 | NC_001875.2 | + | 50933 | 0.66 | 0.946376 |
Target: 5'- cGCCCGuCAa-GUUGUUCGugAACGGc- -3' miRNA: 3'- -UGGGC-GUgcUAACAGGCugUUGCCuc -5' |
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7014 | 3' | -54.4 | NC_001875.2 | + | 54135 | 0.67 | 0.903232 |
Target: 5'- gGCCCGguCGGUacggcaCCGAC-ACGGGGa -3' miRNA: 3'- -UGGGCguGCUAaca---GGCUGuUGCCUC- -5' |
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7014 | 3' | -54.4 | NC_001875.2 | + | 56983 | 0.67 | 0.908864 |
Target: 5'- aAUCCGCcacgACGGUUuugccgagcagcgGUCCGuCAAUGGAGu -3' miRNA: 3'- -UGGGCG----UGCUAA-------------CAGGCuGUUGCCUC- -5' |
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7014 | 3' | -54.4 | NC_001875.2 | + | 69692 | 0.7 | 0.801965 |
Target: 5'- --gCGCGCGAUUGUuuGACGucAUGGAc -3' miRNA: 3'- uggGCGUGCUAACAggCUGU--UGCCUc -5' |
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7014 | 3' | -54.4 | NC_001875.2 | + | 70167 | 0.71 | 0.72344 |
Target: 5'- gGCCCGCugGAgcaUUGUCCGAaaaguguagucaAGCGGc- -3' miRNA: 3'- -UGGGCGugCU---AACAGGCUg-----------UUGCCuc -5' |
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7014 | 3' | -54.4 | NC_001875.2 | + | 73888 | 0.66 | 0.932029 |
Target: 5'- -aCUGCACGAUUagcgCCGGCAuggcguCGGGGu -3' miRNA: 3'- ugGGCGUGCUAAca--GGCUGUu-----GCCUC- -5' |
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7014 | 3' | -54.4 | NC_001875.2 | + | 76869 | 0.67 | 0.900667 |
Target: 5'- cGCCCaGCGCGAgcgacgcGUCCGGCAAacgcgcgcgcaaaGGGGc -3' miRNA: 3'- -UGGG-CGUGCUaa-----CAGGCUGUUg------------CCUC- -5' |
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7014 | 3' | -54.4 | NC_001875.2 | + | 78478 | 0.68 | 0.853024 |
Target: 5'- uGCgCCGCAguuugaacaGGUUGUCggugGACGACGGAGa -3' miRNA: 3'- -UG-GGCGUg--------CUAACAGg---CUGUUGCCUC- -5' |
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7014 | 3' | -54.4 | NC_001875.2 | + | 86262 | 0.68 | 0.883071 |
Target: 5'- gGCCCGCugGAcUUGg-CGGCGAUacaGGAGc -3' miRNA: 3'- -UGGGCGugCU-AACagGCUGUUG---CCUC- -5' |
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7014 | 3' | -54.4 | NC_001875.2 | + | 95944 | 0.66 | 0.932029 |
Target: 5'- aACCCGCugGAg---CUGGCAACGc-- -3' miRNA: 3'- -UGGGCGugCUaacaGGCUGUUGCcuc -5' |
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7014 | 3' | -54.4 | NC_001875.2 | + | 97920 | 0.71 | 0.705294 |
Target: 5'- cGCCCGC-UGcgUGUUCGACGAgGGGu -3' miRNA: 3'- -UGGGCGuGCuaACAGGCUGUUgCCUc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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