miRNA display CGI


Results 21 - 40 of 209 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7014 5' -57.6 NC_001875.2 + 110812 0.66 0.819436
Target:  5'- aCGCCGCgcagGUGgaCGCGcugguGCGCCGCGg- -3'
miRNA:   3'- -GUGGUGaaa-CAC--GCGC-----UGCGGCGCgc -5'
7014 5' -57.6 NC_001875.2 + 25921 0.66 0.819436
Target:  5'- gGCCAaugcccgaguUUUUcGUG-GUGGCGCCGCGCc -3'
miRNA:   3'- gUGGU----------GAAA-CACgCGCUGCGGCGCGc -5'
7014 5' -57.6 NC_001875.2 + 93965 0.66 0.819436
Target:  5'- aGCCGCUg---GCGCGGC-CCGC-CGu -3'
miRNA:   3'- gUGGUGAaacaCGCGCUGcGGCGcGC- -5'
7014 5' -57.6 NC_001875.2 + 34989 0.66 0.810786
Target:  5'- -uCCAaaaUUGUGCGCG-CGCCgucaaacaagGCGCGc -3'
miRNA:   3'- guGGUga-AACACGCGCuGCGG----------CGCGC- -5'
7014 5' -57.6 NC_001875.2 + 36656 0.66 0.810786
Target:  5'- gGCCGCgucGUGCGCGcugaGCUcgggGCGCGu -3'
miRNA:   3'- gUGGUGaaaCACGCGCug--CGG----CGCGC- -5'
7014 5' -57.6 NC_001875.2 + 39310 0.66 0.810786
Target:  5'- gCugCACaccGUGCcgGCGGCGUgCGCGCGc -3'
miRNA:   3'- -GugGUGaaaCACG--CGCUGCG-GCGCGC- -5'
7014 5' -57.6 NC_001875.2 + 40076 0.66 0.810786
Target:  5'- gCACUACgacgagGcCGCGGCGCUGaCGCGc -3'
miRNA:   3'- -GUGGUGaaaca-C-GCGCUGCGGC-GCGC- -5'
7014 5' -57.6 NC_001875.2 + 118572 0.66 0.810786
Target:  5'- gACCAaaaagugaUUGUGgacCGCGGCGCCGcCGUGu -3'
miRNA:   3'- gUGGUga------AACAC---GCGCUGCGGC-GCGC- -5'
7014 5' -57.6 NC_001875.2 + 110565 0.66 0.810786
Target:  5'- gACCAaugucGUGCucguaGCcGCGCCGCGCGc -3'
miRNA:   3'- gUGGUgaaa-CACG-----CGcUGCGGCGCGC- -5'
7014 5' -57.6 NC_001875.2 + 91877 0.66 0.810786
Target:  5'- gCGCCuGCUg-GUGCgGCGGCGggucgggcaaCCGCGCGc -3'
miRNA:   3'- -GUGG-UGAaaCACG-CGCUGC----------GGCGCGC- -5'
7014 5' -57.6 NC_001875.2 + 5815 0.66 0.810786
Target:  5'- gCGCCACUUUGaUG-GCGAggauaGCUGCGaCGu -3'
miRNA:   3'- -GUGGUGAAAC-ACgCGCUg----CGGCGC-GC- -5'
7014 5' -57.6 NC_001875.2 + 85344 0.66 0.810786
Target:  5'- cCGCCGCgaac-GC-CGACGCCGUgGCGg -3'
miRNA:   3'- -GUGGUGaaacaCGcGCUGCGGCG-CGC- -5'
7014 5' -57.6 NC_001875.2 + 128767 0.66 0.810786
Target:  5'- aCGCCguggGCgaccccgGCGCGcCGCUGCGCGc -3'
miRNA:   3'- -GUGG----UGaaaca--CGCGCuGCGGCGCGC- -5'
7014 5' -57.6 NC_001875.2 + 68556 0.66 0.810786
Target:  5'- cCGCCGCg----GCgGCGGCgGUCGCGCa -3'
miRNA:   3'- -GUGGUGaaacaCG-CGCUG-CGGCGCGc -5'
7014 5' -57.6 NC_001875.2 + 97885 0.66 0.810786
Target:  5'- gCGCCGCacgggcacgUUGcggGCGuCGGCGCCGaCGCc -3'
miRNA:   3'- -GUGGUGa--------AACa--CGC-GCUGCGGC-GCGc -5'
7014 5' -57.6 NC_001875.2 + 37894 0.66 0.810786
Target:  5'- aGCgGCUUgcugGCGCGGCacuggcaCCGCGCGu -3'
miRNA:   3'- gUGgUGAAaca-CGCGCUGc------GGCGCGC- -5'
7014 5' -57.6 NC_001875.2 + 45978 0.66 0.810786
Target:  5'- cCGCCGCUgcg-GCGaacuCGCCGUGCa -3'
miRNA:   3'- -GUGGUGAaacaCGCgcu-GCGGCGCGc -5'
7014 5' -57.6 NC_001875.2 + 10398 0.66 0.810786
Target:  5'- cCGCCGCgccgUG-GCGCGGCacCCGCuGCa -3'
miRNA:   3'- -GUGGUGaa--ACaCGCGCUGc-GGCG-CGc -5'
7014 5' -57.6 NC_001875.2 + 21825 0.66 0.809913
Target:  5'- gCGCCACUggucgagcUGCGCGcGCGucaacgccaccgaCCGCGCGu -3'
miRNA:   3'- -GUGGUGAaac-----ACGCGC-UGC-------------GGCGCGC- -5'
7014 5' -57.6 NC_001875.2 + 89129 0.66 0.805519
Target:  5'- gACCGg---GUGCGCcuugcguacgaaaccGcGCGCCGCGCGg -3'
miRNA:   3'- gUGGUgaaaCACGCG---------------C-UGCGGCGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.