miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7015 3' -56.1 NC_001875.2 + 120764 1.07 0.003082
Target:  5'- gUCCAACCGCGAAGUGCUCGUCGCCAAa -3'
miRNA:   3'- -AGGUUGGCGCUUCACGAGCAGCGGUU- -5'
7015 3' -56.1 NC_001875.2 + 30061 0.66 0.874617
Target:  5'- gCCGGCCGUu---UGCaCGUCGCCGAa -3'
miRNA:   3'- aGGUUGGCGcuucACGaGCAGCGGUU- -5'
7015 3' -56.1 NC_001875.2 + 12204 0.66 0.851522
Target:  5'- cCUGGCCGUaAAGUGC-CGaUCGCCGu -3'
miRNA:   3'- aGGUUGGCGcUUCACGaGC-AGCGGUu -5'
7015 3' -56.1 NC_001875.2 + 66062 0.66 0.843402
Target:  5'- gCCGacGCCGCGcgcGUGCUCGcccagcCGCCGg -3'
miRNA:   3'- aGGU--UGGCGCuu-CACGAGCa-----GCGGUu -5'
7015 3' -56.1 NC_001875.2 + 86720 0.67 0.826576
Target:  5'- cCCGGCCGacac-UGCUCGUCGCaCAu -3'
miRNA:   3'- aGGUUGGCgcuucACGAGCAGCG-GUu -5'
7015 3' -56.1 NC_001875.2 + 118020 0.67 0.799984
Target:  5'- uUCCGguACCGCGAccAGUGCgaCGgcaaCGCCGc -3'
miRNA:   3'- -AGGU--UGGCGCU--UCACGa-GCa---GCGGUu -5'
7015 3' -56.1 NC_001875.2 + 55091 0.67 0.790794
Target:  5'- gCCAG-CGCGuccuuGUGCUCGUCcCCGAa -3'
miRNA:   3'- aGGUUgGCGCuu---CACGAGCAGcGGUU- -5'
7015 3' -56.1 NC_001875.2 + 41010 0.68 0.781456
Target:  5'- -aCGGCCGCGuggucGUGCUCaGUCGCg-- -3'
miRNA:   3'- agGUUGGCGCuu---CACGAG-CAGCGguu -5'
7015 3' -56.1 NC_001875.2 + 106009 0.68 0.762373
Target:  5'- cCCGACUucaucuggGCGuugcAGUGCUCGgcgggCGCCGAg -3'
miRNA:   3'- aGGUUGG--------CGCu---UCACGAGCa----GCGGUU- -5'
7015 3' -56.1 NC_001875.2 + 17728 0.68 0.762373
Target:  5'- gCCAaaacACCGU--GGUGCUgugCGUCGCCAu -3'
miRNA:   3'- aGGU----UGGCGcuUCACGA---GCAGCGGUu -5'
7015 3' -56.1 NC_001875.2 + 69425 0.75 0.370669
Target:  5'- uUCCA--CGCGAAGUGCUUGaCGCCGg -3'
miRNA:   3'- -AGGUugGCGCUUCACGAGCaGCGGUu -5'
7015 3' -56.1 NC_001875.2 + 110274 0.73 0.487844
Target:  5'- gCUGGCCGCGGAGcgcgcgggcUGCccCGUCGCCGAg -3'
miRNA:   3'- aGGUUGGCGCUUC---------ACGa-GCAGCGGUU- -5'
7015 3' -56.1 NC_001875.2 + 6490 0.73 0.497591
Target:  5'- cCCAA-CGCGGAGUGC-CG-CGCCAAc -3'
miRNA:   3'- aGGUUgGCGCUUCACGaGCaGCGGUU- -5'
7015 3' -56.1 NC_001875.2 + 63457 0.7 0.650941
Target:  5'- gCCAGCCGCGAGGcGUUgGUUuccaGCCAc -3'
miRNA:   3'- aGGUUGGCGCUUCaCGAgCAG----CGGUu -5'
7015 3' -56.1 NC_001875.2 + 16014 0.7 0.6717
Target:  5'- cUgGGCCGCGAGGUcaaCGUCGCCAc -3'
miRNA:   3'- aGgUUGGCGCUUCAcgaGCAGCGGUu -5'
7015 3' -56.1 NC_001875.2 + 45920 0.68 0.752647
Target:  5'- gCCGACUuuGCuc--UGCUCGUCGCCAGa -3'
miRNA:   3'- aGGUUGG--CGcuucACGAGCAGCGGUU- -5'
7015 3' -56.1 NC_001875.2 + 17834 0.66 0.870155
Target:  5'- gCCAugCGCGAgggcgccgaaaacgaGGUGCa-GUCgGCCGAg -3'
miRNA:   3'- aGGUugGCGCU---------------UCACGagCAG-CGGUU- -5'
7015 3' -56.1 NC_001875.2 + 11807 0.72 0.557706
Target:  5'- gCCGGCCGCGucGGUGUUUGUggucgCGCCGGu -3'
miRNA:   3'- aGGUUGGCGCu-UCACGAGCA-----GCGGUU- -5'
7015 3' -56.1 NC_001875.2 + 94256 0.72 0.557706
Target:  5'- gCCGGCCGCGGc--GCUCG-CGCCGg -3'
miRNA:   3'- aGGUUGGCGCUucaCGAGCaGCGGUu -5'
7015 3' -56.1 NC_001875.2 + 67366 0.7 0.615545
Target:  5'- -aCAACCGCGAcucguccaccgGCUCGUCgGCCAAu -3'
miRNA:   3'- agGUUGGCGCUuca--------CGAGCAG-CGGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.