miRNA display CGI


Results 21 - 40 of 203 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7015 5' -54.1 NC_001875.2 + 14538 0.66 0.908103
Target:  5'- -cUCAACAAGaGUGAGCuGGCGCAcGCGg -3'
miRNA:   3'- uaGGUUGUUCgCGUUUG-CCGCGU-CGU- -5'
7015 5' -54.1 NC_001875.2 + 82711 0.66 0.908103
Target:  5'- -gCCGcCAGucGCGCAGgggcACGGgGCAGCGc -3'
miRNA:   3'- uaGGUuGUU--CGCGUU----UGCCgCGUCGU- -5'
7015 5' -54.1 NC_001875.2 + 14440 0.66 0.908103
Target:  5'- --aCAACAAGCugGCAAagaagcccGCGGC-CAGCAa -3'
miRNA:   3'- uagGUUGUUCG--CGUU--------UGCCGcGUCGU- -5'
7015 5' -54.1 NC_001875.2 + 77267 0.66 0.908103
Target:  5'- -gCCGcCGGGCgaaGCGGccgccGCGGCGCAGUAc -3'
miRNA:   3'- uaGGUuGUUCG---CGUU-----UGCCGCGUCGU- -5'
7015 5' -54.1 NC_001875.2 + 72632 0.66 0.908103
Target:  5'- cUgCGGCAcGC-CAAACGGCGCGGg- -3'
miRNA:   3'- uAgGUUGUuCGcGUUUGCCGCGUCgu -5'
7015 5' -54.1 NC_001875.2 + 98893 0.66 0.908103
Target:  5'- --gCGACAuG-GCGAGCGGCGC-GCAa -3'
miRNA:   3'- uagGUUGUuCgCGUUUGCCGCGuCGU- -5'
7015 5' -54.1 NC_001875.2 + 65042 0.66 0.907464
Target:  5'- -gCCGGCGuacGCGCAAaaguuuuacaacgGCGGCGCcaacacgcugGGCAa -3'
miRNA:   3'- uaGGUUGUu--CGCGUU-------------UGCCGCG----------UCGU- -5'
7015 5' -54.1 NC_001875.2 + 19963 0.66 0.906823
Target:  5'- gGUCCGGCcGGCGCcucgccguugcuGACGuGCGUGGCc -3'
miRNA:   3'- -UAGGUUGuUCGCGu-----------UUGC-CGCGUCGu -5'
7015 5' -54.1 NC_001875.2 + 9766 0.66 0.90423
Target:  5'- uUCCGAggcCAAGCGCAcGCGGCacauccgggcacugcGCGuGCAc -3'
miRNA:   3'- uAGGUU---GUUCGCGUuUGCCG---------------CGU-CGU- -5'
7015 5' -54.1 NC_001875.2 + 81874 0.66 0.901596
Target:  5'- --aCAGCAgcAGCGaCAgcAGCGcGCGCAGCu -3'
miRNA:   3'- uagGUUGU--UCGC-GU--UUGC-CGCGUCGu -5'
7015 5' -54.1 NC_001875.2 + 76448 0.66 0.901596
Target:  5'- cUUCAGCAuGaCGUAcaacGACGGCGcCGGCAa -3'
miRNA:   3'- uAGGUUGUuC-GCGU----UUGCCGC-GUCGU- -5'
7015 5' -54.1 NC_001875.2 + 53922 0.66 0.901596
Target:  5'- -gCCGuuGCGGGCGCGu-UGGCGC-GCAc -3'
miRNA:   3'- uaGGU--UGUUCGCGUuuGCCGCGuCGU- -5'
7015 5' -54.1 NC_001875.2 + 54134 0.66 0.901596
Target:  5'- -aCUAGC--GUGCAAGCGGacgGCGGCAg -3'
miRNA:   3'- uaGGUUGuuCGCGUUUGCCg--CGUCGU- -5'
7015 5' -54.1 NC_001875.2 + 108725 0.66 0.894835
Target:  5'- cGUUCAuCAuGCGCAGcggccuuugGCGGgGCAGCu -3'
miRNA:   3'- -UAGGUuGUuCGCGUU---------UGCCgCGUCGu -5'
7015 5' -54.1 NC_001875.2 + 57548 0.66 0.894835
Target:  5'- -gCCGuagGCGAugcgcuguucgcGCGUAAAcCGGCGCGGCGu -3'
miRNA:   3'- uaGGU---UGUU------------CGCGUUU-GCCGCGUCGU- -5'
7015 5' -54.1 NC_001875.2 + 34811 0.66 0.894835
Target:  5'- -gCCGGCAAGCGUuuACGaCGCuGCc -3'
miRNA:   3'- uaGGUUGUUCGCGuuUGCcGCGuCGu -5'
7015 5' -54.1 NC_001875.2 + 42532 0.66 0.894835
Target:  5'- -gCCGA--AGCGCAugguGGCGGCGCcauGCGg -3'
miRNA:   3'- uaGGUUguUCGCGU----UUGCCGCGu--CGU- -5'
7015 5' -54.1 NC_001875.2 + 69157 0.66 0.894835
Target:  5'- -cUCAACGAuCGCGA--GGCGCAGCu -3'
miRNA:   3'- uaGGUUGUUcGCGUUugCCGCGUCGu -5'
7015 5' -54.1 NC_001875.2 + 102176 0.67 0.887822
Target:  5'- uUCCAACuGGGCGCGuACaGCGUGGUc -3'
miRNA:   3'- uAGGUUG-UUCGCGUuUGcCGCGUCGu -5'
7015 5' -54.1 NC_001875.2 + 104470 0.67 0.887822
Target:  5'- -aCCAGCGGGCGCAAcguGCuGGUG-AGCc -3'
miRNA:   3'- uaGGUUGUUCGCGUU---UG-CCGCgUCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.