miRNA display CGI


Results 1 - 20 of 40 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7016 3' -53.3 NC_001875.2 + 66118 0.66 0.967216
Target:  5'- cGGGCGgcgaGGCGgcgCCGCC-CGCG-GAa -3'
miRNA:   3'- -CCCGUaa--CUGUaa-GGCGGcGUGCaCU- -5'
7016 3' -53.3 NC_001875.2 + 27513 0.66 0.967216
Target:  5'- -aGCGUUGAUGUUuuGCUGCACc--- -3'
miRNA:   3'- ccCGUAACUGUAAggCGGCGUGcacu -5'
7016 3' -53.3 NC_001875.2 + 39229 0.66 0.963912
Target:  5'- cGGGUuuuccGGCAUUCgCGCgCGCAUGcUGGa -3'
miRNA:   3'- -CCCGuaa--CUGUAAG-GCG-GCGUGC-ACU- -5'
7016 3' -53.3 NC_001875.2 + 47956 0.66 0.96357
Target:  5'- aGGCAggGGCAcUCCGCgcccccgUGCGCGUc- -3'
miRNA:   3'- cCCGUaaCUGUaAGGCG-------GCGUGCAcu -5'
7016 3' -53.3 NC_001875.2 + 128773 0.66 0.960383
Target:  5'- uGGGCGaccccGGCGcgCCGCUGCGCGc-- -3'
miRNA:   3'- -CCCGUaa---CUGUaaGGCGGCGUGCacu -5'
7016 3' -53.3 NC_001875.2 + 5924 0.66 0.956622
Target:  5'- uGGCGUUGG-GUagCGCCGCGCagGUGGg -3'
miRNA:   3'- cCCGUAACUgUAagGCGGCGUG--CACU- -5'
7016 3' -53.3 NC_001875.2 + 13803 0.66 0.956622
Target:  5'- cGGGUGgcgcGGCGUUgCCGUCGCAC-UGGu -3'
miRNA:   3'- -CCCGUaa--CUGUAA-GGCGGCGUGcACU- -5'
7016 3' -53.3 NC_001875.2 + 22825 0.66 0.952625
Target:  5'- uGGUGUUGuuCAUUUCGCCGCgaaGCGUu- -3'
miRNA:   3'- cCCGUAACu-GUAAGGCGGCG---UGCAcu -5'
7016 3' -53.3 NC_001875.2 + 95562 0.66 0.948387
Target:  5'- cGGcGCAUUGGCGcUCCGuuGUGCa--- -3'
miRNA:   3'- -CC-CGUAACUGUaAGGCggCGUGcacu -5'
7016 3' -53.3 NC_001875.2 + 102006 0.66 0.948387
Target:  5'- cGGGCAcggGGCcgUCgGCCGUGCccGAg -3'
miRNA:   3'- -CCCGUaa-CUGuaAGgCGGCGUGcaCU- -5'
7016 3' -53.3 NC_001875.2 + 12295 0.66 0.948387
Target:  5'- -uGCAgccGGCAcgCCGCCGUguGCGUGGu -3'
miRNA:   3'- ccCGUaa-CUGUaaGGCGGCG--UGCACU- -5'
7016 3' -53.3 NC_001875.2 + 5358 0.66 0.948387
Target:  5'- uGGuCAUUGACcacCCGCUGgACGUGu -3'
miRNA:   3'- cCC-GUAACUGuaaGGCGGCgUGCACu -5'
7016 3' -53.3 NC_001875.2 + 13083 0.66 0.948387
Target:  5'- cGGGCGUgaGCAggCCGCCcacCAUGUGc -3'
miRNA:   3'- -CCCGUAacUGUaaGGCGGc--GUGCACu -5'
7016 3' -53.3 NC_001875.2 + 22952 0.66 0.94795
Target:  5'- cGGGCGgcGcCAUguacgccUCCGCCGCGCu--- -3'
miRNA:   3'- -CCCGUaaCuGUA-------AGGCGGCGUGcacu -5'
7016 3' -53.3 NC_001875.2 + 2273 0.67 0.943905
Target:  5'- cGGGCcauGUUGACGUcgugaUgCGCgCGCGcCGUGGc -3'
miRNA:   3'- -CCCG---UAACUGUA-----AgGCG-GCGU-GCACU- -5'
7016 3' -53.3 NC_001875.2 + 3131 0.67 0.943905
Target:  5'- uGGGCGgcGAagc-CCGCUGCGCG-GAc -3'
miRNA:   3'- -CCCGUaaCUguaaGGCGGCGUGCaCU- -5'
7016 3' -53.3 NC_001875.2 + 43326 0.67 0.943905
Target:  5'- cGGGuCGgcGugGUUgCCGCCGCGCa--- -3'
miRNA:   3'- -CCC-GUaaCugUAA-GGCGGCGUGcacu -5'
7016 3' -53.3 NC_001875.2 + 54726 0.67 0.939177
Target:  5'- cGGGCGUgGACAgguaGCCGUGCGg-- -3'
miRNA:   3'- -CCCGUAaCUGUaaggCGGCGUGCacu -5'
7016 3' -53.3 NC_001875.2 + 8514 0.67 0.939177
Target:  5'- aGGGCGU--GCGcUCUGCCuGCGCGUc- -3'
miRNA:   3'- -CCCGUAacUGUaAGGCGG-CGUGCAcu -5'
7016 3' -53.3 NC_001875.2 + 127212 0.67 0.934201
Target:  5'- uGGGUGUgcUGACGcUUUCGCCGUAcacCGUGu -3'
miRNA:   3'- -CCCGUA--ACUGU-AAGGCGGCGU---GCACu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.