miRNA display CGI


Results 21 - 40 of 333 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7016 5' -60 NC_001875.2 + 18688 0.66 0.699648
Target:  5'- aAACGGCGCGCGcGCcGGcGUGCACauuaacguGCCg -3'
miRNA:   3'- -UUGCUGCGCGUcCGuCU-CGCGUG--------CGG- -5'
7016 5' -60 NC_001875.2 + 77884 0.66 0.699648
Target:  5'- cAAUGAuUGUGUugAGGCGGGcccccaagaaucGUGCGCGCCa -3'
miRNA:   3'- -UUGCU-GCGCG--UCCGUCU------------CGCGUGCGG- -5'
7016 5' -60 NC_001875.2 + 126522 0.66 0.699648
Target:  5'- -uCGGCGaGCAGGUAGcGCGCAauggagugguCGUCg -3'
miRNA:   3'- uuGCUGCgCGUCCGUCuCGCGU----------GCGG- -5'
7016 5' -60 NC_001875.2 + 114974 0.66 0.698652
Target:  5'- aAGCGGuCGCGCuGGCGGcgccgauuaacacGGCuacGCAUGCUa -3'
miRNA:   3'- -UUGCU-GCGCGuCCGUC-------------UCG---CGUGCGG- -5'
7016 5' -60 NC_001875.2 + 36490 0.66 0.689658
Target:  5'- -cCGACGCGU--GCAcGuGCGC-CGCCg -3'
miRNA:   3'- uuGCUGCGCGucCGU-CuCGCGuGCGG- -5'
7016 5' -60 NC_001875.2 + 98653 0.66 0.689658
Target:  5'- cAGCGAgGCGCuggaauguaAGGUgugccucgagcGGcAGCGCgACGCCg -3'
miRNA:   3'- -UUGCUgCGCG---------UCCG-----------UC-UCGCG-UGCGG- -5'
7016 5' -60 NC_001875.2 + 130565 0.66 0.689658
Target:  5'- -uCGACGCGCAa-CAGcGCuucaauGCGCGCCa -3'
miRNA:   3'- uuGCUGCGCGUccGUCuCG------CGUGCGG- -5'
7016 5' -60 NC_001875.2 + 42569 0.66 0.689658
Target:  5'- cAGCcGCGC-CAGGUc-GGCGCACGCg -3'
miRNA:   3'- -UUGcUGCGcGUCCGucUCGCGUGCGg -5'
7016 5' -60 NC_001875.2 + 91162 0.66 0.689658
Target:  5'- uGACGGuCGCGCAauuGGaCGGAaugucgccGCGCAacaGCCg -3'
miRNA:   3'- -UUGCU-GCGCGU---CC-GUCU--------CGCGUg--CGG- -5'
7016 5' -60 NC_001875.2 + 88234 0.66 0.689658
Target:  5'- aAACG--GCGCAaGC--GGCGCGCGCCg -3'
miRNA:   3'- -UUGCugCGCGUcCGucUCGCGUGCGG- -5'
7016 5' -60 NC_001875.2 + 40605 0.66 0.689658
Target:  5'- uACGGCGC-CGuGguGGGCGCcaccacGCGCCu -3'
miRNA:   3'- uUGCUGCGcGUcCguCUCGCG------UGCGG- -5'
7016 5' -60 NC_001875.2 + 129623 0.66 0.689658
Target:  5'- --gGACGUGaaggAGGCAGAGCuuGCacacgagucgaACGCCa -3'
miRNA:   3'- uugCUGCGCg---UCCGUCUCG--CG-----------UGCGG- -5'
7016 5' -60 NC_001875.2 + 39322 0.66 0.688656
Target:  5'- aAACG-CGC-CGGGCGcgcacGAGCGCccguuuuGCGCCc -3'
miRNA:   3'- -UUGCuGCGcGUCCGU-----CUCGCG-------UGCGG- -5'
7016 5' -60 NC_001875.2 + 82988 0.66 0.679621
Target:  5'- cGCGGCGCcgcucgucgccgGCGGGCuugaAGCG-GCGCCg -3'
miRNA:   3'- uUGCUGCG------------CGUCCGuc--UCGCgUGCGG- -5'
7016 5' -60 NC_001875.2 + 68560 0.66 0.679621
Target:  5'- cGCGGCG-GC-GGCGGucGCGCaccgcgugGCGCCg -3'
miRNA:   3'- uUGCUGCgCGuCCGUCu-CGCG--------UGCGG- -5'
7016 5' -60 NC_001875.2 + 42487 0.66 0.679621
Target:  5'- cGCGcACGCGCAcGCcGucguccGCGUGCGCCg -3'
miRNA:   3'- uUGC-UGCGCGUcCGuCu-----CGCGUGCGG- -5'
7016 5' -60 NC_001875.2 + 82246 0.66 0.679621
Target:  5'- ---uGCGCGCuGGUGGuAGCGCuCGUCg -3'
miRNA:   3'- uugcUGCGCGuCCGUC-UCGCGuGCGG- -5'
7016 5' -60 NC_001875.2 + 40833 0.66 0.679621
Target:  5'- -cCGGC-CGUGGGCAagacGGCGCuCGCCa -3'
miRNA:   3'- uuGCUGcGCGUCCGUc---UCGCGuGCGG- -5'
7016 5' -60 NC_001875.2 + 48966 0.66 0.679621
Target:  5'- -uUGACaUGCAcGCAGAGuCGgGCGCCg -3'
miRNA:   3'- uuGCUGcGCGUcCGUCUC-GCgUGCGG- -5'
7016 5' -60 NC_001875.2 + 116910 0.66 0.679621
Target:  5'- uAGCcGCGCGC-GGCGGguGGCGCACa-- -3'
miRNA:   3'- -UUGcUGCGCGuCCGUC--UCGCGUGcgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.