miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7017 3' -57.1 NC_001875.2 + 67169 0.66 0.824175
Target:  5'- -aCAGCGUGGUGGacacCGC----GGUCGGg -3'
miRNA:   3'- ugGUCGCACCGCC----GCGauuuCCAGUC- -5'
7017 3' -57.1 NC_001875.2 + 3154 0.66 0.806648
Target:  5'- gACgCGGCGUcgGGCGGCGagu-AGGUgAGc -3'
miRNA:   3'- -UG-GUCGCA--CCGCCGCgauuUCCAgUC- -5'
7017 3' -57.1 NC_001875.2 + 51932 0.66 0.806648
Target:  5'- uGCaCAGCGU-GCGGCGCUAcuuuGGGcgCGa -3'
miRNA:   3'- -UG-GUCGCAcCGCCGCGAUu---UCCa-GUc -5'
7017 3' -57.1 NC_001875.2 + 66116 0.66 0.805754
Target:  5'- gGCgGGCGgcgaGGCGGCGCcgcccgcggaacaguGGUCGGc -3'
miRNA:   3'- -UGgUCGCa---CCGCCGCGauuu-----------CCAGUC- -5'
7017 3' -57.1 NC_001875.2 + 116965 0.66 0.797637
Target:  5'- --aAGUGUGuGgGGUGCagaaUGGAGGUCAGg -3'
miRNA:   3'- uggUCGCAC-CgCCGCG----AUUUCCAGUC- -5'
7017 3' -57.1 NC_001875.2 + 61598 0.66 0.797637
Target:  5'- gGCUcgGGCGccGGCGGCGCUucGGGcugugUCGGc -3'
miRNA:   3'- -UGG--UCGCa-CCGCCGCGAuuUCC-----AGUC- -5'
7017 3' -57.1 NC_001875.2 + 50389 0.67 0.788474
Target:  5'- gACCAGCGUguacuuuuugcGGaCGGCGCaGAcGGcCAGc -3'
miRNA:   3'- -UGGUCGCA-----------CC-GCCGCGaUUuCCaGUC- -5'
7017 3' -57.1 NC_001875.2 + 42741 0.67 0.779168
Target:  5'- cGCgCGGCGacgcgcauggUGaGCGGCGCgcucGGGUCGGc -3'
miRNA:   3'- -UG-GUCGC----------AC-CGCCGCGauu-UCCAGUC- -5'
7017 3' -57.1 NC_001875.2 + 113321 0.67 0.767823
Target:  5'- cACCAGCaUGGUGG-GCUuuucgugcggcGGGUCGGg -3'
miRNA:   3'- -UGGUCGcACCGCCgCGAuu---------UCCAGUC- -5'
7017 3' -57.1 NC_001875.2 + 40461 0.67 0.76016
Target:  5'- aGCCccgagGGCGUGGUGGUGCc-GGGcGUCAu -3'
miRNA:   3'- -UGG-----UCGCACCGCCGCGauUUC-CAGUc -5'
7017 3' -57.1 NC_001875.2 + 127402 0.67 0.750478
Target:  5'- gGCCaaAGUGcUGGCGGCGCgc---GUCAGc -3'
miRNA:   3'- -UGG--UCGC-ACCGCCGCGauuucCAGUC- -5'
7017 3' -57.1 NC_001875.2 + 5338 0.68 0.720833
Target:  5'- cGCCGaguGCGgGGCGGUGCU---GGUCAu -3'
miRNA:   3'- -UGGU---CGCaCCGCCGCGAuuuCCAGUc -5'
7017 3' -57.1 NC_001875.2 + 39321 0.68 0.710783
Target:  5'- uGCCGGCGgcguGCGcGCGCUGcAGGcgCAGc -3'
miRNA:   3'- -UGGUCGCac--CGC-CGCGAUuUCCa-GUC- -5'
7017 3' -57.1 NC_001875.2 + 42680 0.68 0.690488
Target:  5'- cGCCAGCGUGcacgaaaccgcGCGGCGCgc--GGUUu- -3'
miRNA:   3'- -UGGUCGCAC-----------CGCCGCGauuuCCAGuc -5'
7017 3' -57.1 NC_001875.2 + 72563 0.69 0.680262
Target:  5'- uGCgGGCGcgGGCgcgGGCGCUGcGGGUgCGGg -3'
miRNA:   3'- -UGgUCGCa-CCG---CCGCGAUuUCCA-GUC- -5'
7017 3' -57.1 NC_001875.2 + 11878 0.69 0.649376
Target:  5'- -gCGGUGUGcGCGGCGacggAGGGGUCGu -3'
miRNA:   3'- ugGUCGCAC-CGCCGCga--UUUCCAGUc -5'
7017 3' -57.1 NC_001875.2 + 36712 0.69 0.6287
Target:  5'- cGCCGGcCGUGGC-GCGCUccacAAcGGUUAGg -3'
miRNA:   3'- -UGGUC-GCACCGcCGCGA----UUuCCAGUC- -5'
7017 3' -57.1 NC_001875.2 + 61738 0.7 0.618363
Target:  5'- gGCCGGCu--GCGGCGCaaAGGGGUCAa -3'
miRNA:   3'- -UGGUCGcacCGCCGCGa-UUUCCAGUc -5'
7017 3' -57.1 NC_001875.2 + 33877 0.7 0.618363
Target:  5'- uGCUAGCGUGGCcgaaaugacuaGCGCcucGGGGUCGGu -3'
miRNA:   3'- -UGGUCGCACCGc----------CGCGau-UUCCAGUC- -5'
7017 3' -57.1 NC_001875.2 + 21027 0.7 0.587444
Target:  5'- cACCAGCGcguccaccUGcGCGGCGUUGuauccguGGUCGGc -3'
miRNA:   3'- -UGGUCGC--------AC-CGCCGCGAUuu-----CCAGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.