Results 1 - 20 of 24 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7017 | 3' | -57.1 | NC_001875.2 | + | 124808 | 1.08 | 0.001876 |
Target: 5'- cACCAGCGUGGCGGCGCUAAAGGUCAGa -3' miRNA: 3'- -UGGUCGCACCGCCGCGAUUUCCAGUC- -5' |
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7017 | 3' | -57.1 | NC_001875.2 | + | 29803 | 0.78 | 0.232305 |
Target: 5'- uGCgGGCGcUGGCGGCGCau-GGGUCAa -3' miRNA: 3'- -UGgUCGC-ACCGCCGCGauuUCCAGUc -5' |
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7017 | 3' | -57.1 | NC_001875.2 | + | 131753 | 0.71 | 0.526675 |
Target: 5'- gGCCGGCGgcggaucgGGCGGCGCgucauuGGuGUCGu -3' miRNA: 3'- -UGGUCGCa-------CCGCCGCGauu---UC-CAGUc -5' |
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7017 | 3' | -57.1 | NC_001875.2 | + | 98151 | 0.71 | 0.546712 |
Target: 5'- gAUCAGCG-GGCGGCGCac---GUCGGg -3' miRNA: 3'- -UGGUCGCaCCGCCGCGauuucCAGUC- -5' |
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7017 | 3' | -57.1 | NC_001875.2 | + | 33877 | 0.7 | 0.618363 |
Target: 5'- uGCUAGCGUGGCcgaaaugacuaGCGCcucGGGGUCGGu -3' miRNA: 3'- -UGGUCGCACCGc----------CGCGau-UUCCAGUC- -5' |
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7017 | 3' | -57.1 | NC_001875.2 | + | 21027 | 0.7 | 0.587444 |
Target: 5'- cACCAGCGcguccaccUGcGCGGCGUUGuauccguGGUCGGc -3' miRNA: 3'- -UGGUCGC--------AC-CGCCGCGAUuu-----CCAGUC- -5' |
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7017 | 3' | -57.1 | NC_001875.2 | + | 61738 | 0.7 | 0.618363 |
Target: 5'- gGCCGGCu--GCGGCGCaaAGGGGUCAa -3' miRNA: 3'- -UGGUCGcacCGCCGCGa-UUUCCAGUc -5' |
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7017 | 3' | -57.1 | NC_001875.2 | + | 36712 | 0.69 | 0.6287 |
Target: 5'- cGCCGGcCGUGGC-GCGCUccacAAcGGUUAGg -3' miRNA: 3'- -UGGUC-GCACCGcCGCGA----UUuCCAGUC- -5' |
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7017 | 3' | -57.1 | NC_001875.2 | + | 72563 | 0.69 | 0.680262 |
Target: 5'- uGCgGGCGcgGGCgcgGGCGCUGcGGGUgCGGg -3' miRNA: 3'- -UGgUCGCa-CCG---CCGCGAUuUCCA-GUC- -5' |
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7017 | 3' | -57.1 | NC_001875.2 | + | 11878 | 0.69 | 0.649376 |
Target: 5'- -gCGGUGUGcGCGGCGacggAGGGGUCGu -3' miRNA: 3'- ugGUCGCAC-CGCCGCga--UUUCCAGUc -5' |
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7017 | 3' | -57.1 | NC_001875.2 | + | 39321 | 0.68 | 0.710783 |
Target: 5'- uGCCGGCGgcguGCGcGCGCUGcAGGcgCAGc -3' miRNA: 3'- -UGGUCGCac--CGC-CGCGAUuUCCa-GUC- -5' |
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7017 | 3' | -57.1 | NC_001875.2 | + | 5338 | 0.68 | 0.720833 |
Target: 5'- cGCCGaguGCGgGGCGGUGCU---GGUCAu -3' miRNA: 3'- -UGGU---CGCaCCGCCGCGAuuuCCAGUc -5' |
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7017 | 3' | -57.1 | NC_001875.2 | + | 42680 | 0.68 | 0.690488 |
Target: 5'- cGCCAGCGUGcacgaaaccgcGCGGCGCgc--GGUUu- -3' miRNA: 3'- -UGGUCGCAC-----------CGCCGCGauuuCCAGuc -5' |
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7017 | 3' | -57.1 | NC_001875.2 | + | 127402 | 0.67 | 0.750478 |
Target: 5'- gGCCaaAGUGcUGGCGGCGCgc---GUCAGc -3' miRNA: 3'- -UGG--UCGC-ACCGCCGCGauuucCAGUC- -5' |
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7017 | 3' | -57.1 | NC_001875.2 | + | 113321 | 0.67 | 0.767823 |
Target: 5'- cACCAGCaUGGUGG-GCUuuucgugcggcGGGUCGGg -3' miRNA: 3'- -UGGUCGcACCGCCgCGAuu---------UCCAGUC- -5' |
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7017 | 3' | -57.1 | NC_001875.2 | + | 50389 | 0.67 | 0.788474 |
Target: 5'- gACCAGCGUguacuuuuugcGGaCGGCGCaGAcGGcCAGc -3' miRNA: 3'- -UGGUCGCA-----------CC-GCCGCGaUUuCCaGUC- -5' |
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7017 | 3' | -57.1 | NC_001875.2 | + | 42741 | 0.67 | 0.779168 |
Target: 5'- cGCgCGGCGacgcgcauggUGaGCGGCGCgcucGGGUCGGc -3' miRNA: 3'- -UG-GUCGC----------AC-CGCCGCGauu-UCCAGUC- -5' |
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7017 | 3' | -57.1 | NC_001875.2 | + | 40461 | 0.67 | 0.76016 |
Target: 5'- aGCCccgagGGCGUGGUGGUGCc-GGGcGUCAu -3' miRNA: 3'- -UGG-----UCGCACCGCCGCGauUUC-CAGUc -5' |
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7017 | 3' | -57.1 | NC_001875.2 | + | 67169 | 0.66 | 0.824175 |
Target: 5'- -aCAGCGUGGUGGacacCGC----GGUCGGg -3' miRNA: 3'- ugGUCGCACCGCC----GCGauuuCCAGUC- -5' |
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7017 | 3' | -57.1 | NC_001875.2 | + | 3154 | 0.66 | 0.806648 |
Target: 5'- gACgCGGCGUcgGGCGGCGagu-AGGUgAGc -3' miRNA: 3'- -UG-GUCGCA--CCGCCGCgauuUCCAgUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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