miRNA display CGI


Results 21 - 40 of 275 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7017 5' -62 NC_001875.2 + 3109 0.66 0.605341
Target:  5'- gGCgCGGCUcgcggcgcagaccugGGCGGCgaaGCCCGCugCGc -3'
miRNA:   3'- gCG-GCCGG---------------UCGUCGug-UGGGUGugGC- -5'
7017 5' -62 NC_001875.2 + 39969 0.66 0.601372
Target:  5'- cCGCCGcaCCAGCAG-GCGCCCugGgggcCCGu -3'
miRNA:   3'- -GCGGCc-GGUCGUCgUGUGGGugU----GGC- -5'
7017 5' -62 NC_001875.2 + 50360 0.66 0.601372
Target:  5'- gCGUCgGGCC-GC-GCGCGCCaCugACCGc -3'
miRNA:   3'- -GCGG-CCGGuCGuCGUGUGG-GugUGGC- -5'
7017 5' -62 NC_001875.2 + 117934 0.66 0.601372
Target:  5'- uGCaGGCCGGCGuGCGCGCC---GCCGc -3'
miRNA:   3'- gCGgCCGGUCGU-CGUGUGGgugUGGC- -5'
7017 5' -62 NC_001875.2 + 98045 0.66 0.601372
Target:  5'- gCGCCGaCgGGCaAGUGCGCCUAgACCa -3'
miRNA:   3'- -GCGGCcGgUCG-UCGUGUGGGUgUGGc -5'
7017 5' -62 NC_001875.2 + 33097 0.66 0.601372
Target:  5'- gCGCCGuCgCGGCugAGCACGCaCCACGacCCGg -3'
miRNA:   3'- -GCGGCcG-GUCG--UCGUGUG-GGUGU--GGC- -5'
7017 5' -62 NC_001875.2 + 11912 0.66 0.601372
Target:  5'- aCGgCGGCgAGCAgguguuuuGCGCGCggCGCGCCGa -3'
miRNA:   3'- -GCgGCCGgUCGU--------CGUGUGg-GUGUGGC- -5'
7017 5' -62 NC_001875.2 + 4423 0.66 0.601372
Target:  5'- uGCaCGG-CGGCAuGCugACgCGCGCCGc -3'
miRNA:   3'- gCG-GCCgGUCGU-CGugUGgGUGUGGC- -5'
7017 5' -62 NC_001875.2 + 112367 0.66 0.601372
Target:  5'- aGCC-GCCAGCAccaGCGCCCGaGCCu -3'
miRNA:   3'- gCGGcCGGUCGUcg-UGUGGGUgUGGc -5'
7017 5' -62 NC_001875.2 + 92189 0.66 0.601372
Target:  5'- cCGCCGGCCcaaacucgcgcGCGGUuCGCUgCGCGCCa -3'
miRNA:   3'- -GCGGCCGGu----------CGUCGuGUGG-GUGUGGc -5'
7017 5' -62 NC_001875.2 + 40776 0.66 0.601372
Target:  5'- uCGCuaaaCGGCguGCuGCGCguGCCCAgCACCa -3'
miRNA:   3'- -GCG----GCCGguCGuCGUG--UGGGU-GUGGc -5'
7017 5' -62 NC_001875.2 + 63139 0.66 0.601372
Target:  5'- gCGCgCGGCCGGC-GCACGggUCCACGg-- -3'
miRNA:   3'- -GCG-GCCGGUCGuCGUGU--GGGUGUggc -5'
7017 5' -62 NC_001875.2 + 108242 0.66 0.601372
Target:  5'- uGgCGGCCGGCuGgGCugCgGCAUCa -3'
miRNA:   3'- gCgGCCGGUCGuCgUGugGgUGUGGc -5'
7017 5' -62 NC_001875.2 + 95504 0.66 0.601372
Target:  5'- cCGCCGGCCGcGUAcacGCGCAacagcCCCAgCGCgGg -3'
miRNA:   3'- -GCGGCCGGU-CGU---CGUGU-----GGGU-GUGgC- -5'
7017 5' -62 NC_001875.2 + 104518 0.66 0.600381
Target:  5'- aCGCCGuCCGGCuuuuGCACGCgCAUggcaaacaagaugGCCGg -3'
miRNA:   3'- -GCGGCcGGUCGu---CGUGUGgGUG-------------UGGC- -5'
7017 5' -62 NC_001875.2 + 18192 0.66 0.600381
Target:  5'- uGCCGGCgGGCguaGGCGuggugguUGCCCAauCGCCGc -3'
miRNA:   3'- gCGGCCGgUCG---UCGU-------GUGGGU--GUGGC- -5'
7017 5' -62 NC_001875.2 + 124769 0.66 0.591466
Target:  5'- gCGCacaGGCCGGUGGCGuCGCcgcagcggaaCCAgGCCGa -3'
miRNA:   3'- -GCGg--CCGGUCGUCGU-GUG----------GGUgUGGC- -5'
7017 5' -62 NC_001875.2 + 127397 0.66 0.591466
Target:  5'- aGCCuGGCCaaagugcuGGCGGCGCGCgucagCAUGCCGc -3'
miRNA:   3'- gCGG-CCGG--------UCGUCGUGUGg----GUGUGGC- -5'
7017 5' -62 NC_001875.2 + 87430 0.66 0.591466
Target:  5'- cCGCCccaCCAacuuGCAGUGCGCgCGCGCCGa -3'
miRNA:   3'- -GCGGcc-GGU----CGUCGUGUGgGUGUGGC- -5'
7017 5' -62 NC_001875.2 + 79882 0.66 0.591466
Target:  5'- aCGCgCGcGCguGCGGCACgucgcGCCCaaaguaGCGCCGc -3'
miRNA:   3'- -GCG-GC-CGguCGUCGUG-----UGGG------UGUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.