miRNA display CGI


Results 21 - 40 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7018 3' -58.8 NC_001875.2 + 108939 0.66 0.743449
Target:  5'- aCGGCGuuGCGCAGCaGGau--GCGGCc -3'
miRNA:   3'- -GCUGCgcCGCGUCGaCCaaguCGCUG- -5'
7018 3' -58.8 NC_001875.2 + 77398 0.66 0.742484
Target:  5'- gCGcCGCGGCuaacgaccgccacGC-GCU-GUUCGGCGACa -3'
miRNA:   3'- -GCuGCGCCG-------------CGuCGAcCAAGUCGCUG- -5'
7018 3' -58.8 NC_001875.2 + 30322 0.66 0.733756
Target:  5'- aGGCGCGugcuauuuuuaGCGguGCg---UCAGCGGCg -3'
miRNA:   3'- gCUGCGC-----------CGCguCGaccaAGUCGCUG- -5'
7018 3' -58.8 NC_001875.2 + 119668 0.66 0.733756
Target:  5'- uCGGCgGCGGCGCacAGC-GGcUUCAGCcGAa -3'
miRNA:   3'- -GCUG-CGCCGCG--UCGaCC-AAGUCG-CUg -5'
7018 3' -58.8 NC_001875.2 + 30718 0.66 0.733756
Target:  5'- aGGCGCGugcuauuuuuaGCGguGCg---UCAGCGGCg -3'
miRNA:   3'- gCUGCGC-----------CGCguCGaccaAGUCGCUG- -5'
7018 3' -58.8 NC_001875.2 + 30256 0.66 0.733756
Target:  5'- aGGCGCGugcuauuuuuaGCGguGCg---UCAGCGGCg -3'
miRNA:   3'- gCUGCGC-----------CGCguCGaccaAGUCGCUG- -5'
7018 3' -58.8 NC_001875.2 + 1316 0.66 0.733756
Target:  5'- aGGCGCGugcuauuuuuaGCGguGCg---UCAGCGGCg -3'
miRNA:   3'- gCUGCGC-----------CGCguCGaccaAGUCGCUG- -5'
7018 3' -58.8 NC_001875.2 + 21951 0.66 0.733756
Target:  5'- aCGuuCGCGGCGCGG--GGaUgGGCGGCg -3'
miRNA:   3'- -GCu-GCGCCGCGUCgaCCaAgUCGCUG- -5'
7018 3' -58.8 NC_001875.2 + 30586 0.66 0.733756
Target:  5'- aGGCGCGugcuauuuuuaGCGguGCg---UCAGCGGCg -3'
miRNA:   3'- gCUGCGC-----------CGCguCGaccaAGUCGCUG- -5'
7018 3' -58.8 NC_001875.2 + 84909 0.66 0.733756
Target:  5'- uGGCGUaGCGCAGCacgGGgcUGGCGAa -3'
miRNA:   3'- gCUGCGcCGCGUCGa--CCaaGUCGCUg -5'
7018 3' -58.8 NC_001875.2 + 81103 0.66 0.733756
Target:  5'- gCGACGCgGGC-CAGUUGGgcCAGUaACa -3'
miRNA:   3'- -GCUGCG-CCGcGUCGACCaaGUCGcUG- -5'
7018 3' -58.8 NC_001875.2 + 63685 0.66 0.730831
Target:  5'- -uGCGCGGCGCGcagcguucgccgauGCgguuugucGGUcgCGGCGACg -3'
miRNA:   3'- gcUGCGCCGCGU--------------CGa-------CCAa-GUCGCUG- -5'
7018 3' -58.8 NC_001875.2 + 69197 0.66 0.729854
Target:  5'- gCGuGCGCGGCGCcgacggccaguacGCUuGUUCGgGCGACg -3'
miRNA:   3'- -GC-UGCGCCGCGu------------CGAcCAAGU-CGCUG- -5'
7018 3' -58.8 NC_001875.2 + 5345 0.67 0.723976
Target:  5'- -uGCGgGGCGguGCUGGU-CAuUGACc -3'
miRNA:   3'- gcUGCgCCGCguCGACCAaGUcGCUG- -5'
7018 3' -58.8 NC_001875.2 + 111772 0.67 0.723976
Target:  5'- cCGACGacuGGUGUcGCUGGUgaCGGCGGu -3'
miRNA:   3'- -GCUGCg--CCGCGuCGACCAa-GUCGCUg -5'
7018 3' -58.8 NC_001875.2 + 65787 0.67 0.723976
Target:  5'- aCGcGCGCGGCGuCGGCgcgcGGUgccugcGCGGCg -3'
miRNA:   3'- -GC-UGCGCCGC-GUCGa---CCAagu---CGCUG- -5'
7018 3' -58.8 NC_001875.2 + 50481 0.67 0.723976
Target:  5'- gCGACGCGGC-CGGCgcgugCGcGCGGCa -3'
miRNA:   3'- -GCUGCGCCGcGUCGaccaaGU-CGCUG- -5'
7018 3' -58.8 NC_001875.2 + 7313 0.67 0.723976
Target:  5'- cCGACuCGcCGCAGUuugUGGacgUCAGCGACc -3'
miRNA:   3'- -GCUGcGCcGCGUCG---ACCa--AGUCGCUG- -5'
7018 3' -58.8 NC_001875.2 + 75238 0.67 0.714118
Target:  5'- aCGGCGaCGGCgaugGCGGC-GGcgUCGGCGAn -3'
miRNA:   3'- -GCUGC-GCCG----CGUCGaCCa-AGUCGCUg -5'
7018 3' -58.8 NC_001875.2 + 11983 0.67 0.714118
Target:  5'- uGGCGaCGGCGUugGGCgcgGGUgUGGUGGCg -3'
miRNA:   3'- gCUGC-GCCGCG--UCGa--CCAaGUCGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.