miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7018 5' -54.2 NC_001875.2 + 79610 0.66 0.952198
Target:  5'- aGGUCGUUGA-GCCgCaGucGCGCGUCc -3'
miRNA:   3'- cCCAGCGACUaCGG-GaCuuUGUGCGG- -5'
7018 5' -54.2 NC_001875.2 + 38555 0.66 0.952198
Target:  5'- cGGGUUGCUGcgucggcgcggcGUGCCCauccUGcucuACACggGCCa -3'
miRNA:   3'- -CCCAGCGAC------------UACGGG----ACuu--UGUG--CGG- -5'
7018 5' -54.2 NC_001875.2 + 54579 0.66 0.952198
Target:  5'- cGGcCGCUuc-GCCCgGcgGCGCGCCc -3'
miRNA:   3'- cCCaGCGAcuaCGGGaCuuUGUGCGG- -5'
7018 5' -54.2 NC_001875.2 + 72618 0.66 0.947973
Target:  5'- aGGUUGUUuacGgCCUGcgGCACGCCa -3'
miRNA:   3'- cCCAGCGAcuaCgGGACuuUGUGCGG- -5'
7018 5' -54.2 NC_001875.2 + 73784 0.66 0.947973
Target:  5'- aGGGUUGUggcgGcgGCggCUGGAacggcaGCGCGCCg -3'
miRNA:   3'- -CCCAGCGa---CuaCGg-GACUU------UGUGCGG- -5'
7018 5' -54.2 NC_001875.2 + 30282 0.66 0.947973
Target:  5'- cGGGUUGCaGAUGUUUcGcAACGCGUCc -3'
miRNA:   3'- -CCCAGCGaCUACGGGaCuUUGUGCGG- -5'
7018 5' -54.2 NC_001875.2 + 54936 0.66 0.943508
Target:  5'- -cGUCGCUGGgcgccGCCCcuuuGCGCGCg -3'
miRNA:   3'- ccCAGCGACUa----CGGGacuuUGUGCGg -5'
7018 5' -54.2 NC_001875.2 + 50418 0.66 0.9388
Target:  5'- cGGGcaCGCgcagGCUgCUGGAACACGUCa -3'
miRNA:   3'- -CCCa-GCGacuaCGG-GACUUUGUGCGG- -5'
7018 5' -54.2 NC_001875.2 + 130451 0.66 0.933848
Target:  5'- aGGGcgcCGCUGAcGCaCCgcuagcACGCGCCg -3'
miRNA:   3'- -CCCa--GCGACUaCG-GGacuu--UGUGCGG- -5'
7018 5' -54.2 NC_001875.2 + 100060 0.66 0.933848
Target:  5'- uGGa-GCUGAcggUGCUgCUGggGCACGCg -3'
miRNA:   3'- cCCagCGACU---ACGG-GACuuUGUGCGg -5'
7018 5' -54.2 NC_001875.2 + 58356 0.66 0.933848
Target:  5'- aGGUCGCc-AUGCUCgucGGACGCGUCg -3'
miRNA:   3'- cCCAGCGacUACGGGac-UUUGUGCGG- -5'
7018 5' -54.2 NC_001875.2 + 2931 0.66 0.92865
Target:  5'- uGGUCGUUGAcgauggggaagcUGUCUUccacGAAGCGCGUCc -3'
miRNA:   3'- cCCAGCGACU------------ACGGGA----CUUUGUGCGG- -5'
7018 5' -54.2 NC_001875.2 + 119874 0.66 0.92865
Target:  5'- -cGUCGCcaGUGCuUCUGcAACGCGCCg -3'
miRNA:   3'- ccCAGCGacUACG-GGACuUUGUGCGG- -5'
7018 5' -54.2 NC_001875.2 + 125465 0.66 0.92865
Target:  5'- cGGGcCGCgcGGUGCCCgacGAcGACAUcgugGCCg -3'
miRNA:   3'- -CCCaGCGa-CUACGGGa--CU-UUGUG----CGG- -5'
7018 5' -54.2 NC_001875.2 + 121427 0.66 0.92865
Target:  5'- gGGGUCGg-GAUGCac---GGCGCGCCu -3'
miRNA:   3'- -CCCAGCgaCUACGggacuUUGUGCGG- -5'
7018 5' -54.2 NC_001875.2 + 78215 0.66 0.92865
Target:  5'- gGGGcUGUUGuUGaCgCUGAGGCGCGUCa -3'
miRNA:   3'- -CCCaGCGACuAC-GgGACUUUGUGCGG- -5'
7018 5' -54.2 NC_001875.2 + 90804 0.67 0.925412
Target:  5'- aGGUCGUUGGUGUUcccgacgugucgcgaCUGAG-CACGaCCa -3'
miRNA:   3'- cCCAGCGACUACGG---------------GACUUuGUGC-GG- -5'
7018 5' -54.2 NC_001875.2 + 35388 0.67 0.923205
Target:  5'- aGG-CGCUGcUGUCCgUGgcGCGCGCg -3'
miRNA:   3'- cCCaGCGACuACGGG-ACuuUGUGCGg -5'
7018 5' -54.2 NC_001875.2 + 123549 0.67 0.923205
Target:  5'- -aGUCGCaaaGA-GCCCgUGAAcgaaaACGCGCCg -3'
miRNA:   3'- ccCAGCGa--CUaCGGG-ACUU-----UGUGCGG- -5'
7018 5' -54.2 NC_001875.2 + 26864 0.67 0.917513
Target:  5'- --uUUGCUGAUGCCgUGcaccAGCcCGCCg -3'
miRNA:   3'- cccAGCGACUACGGgACu---UUGuGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.