miRNA display CGI


Results 21 - 40 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7019 5' -60.1 NC_001875.2 + 85825 0.66 0.686947
Target:  5'- gGCGCCagcugCGugGGCGGCCGa------ -3'
miRNA:   3'- gCGCGGa----GUugCCGCCGGCcgcauuu -5'
7019 5' -60.1 NC_001875.2 + 75288 0.66 0.686947
Target:  5'- gGCGUCggCGAUGGC-GUCGGCGUu-- -3'
miRNA:   3'- gCGCGGa-GUUGCCGcCGGCCGCAuuu -5'
7019 5' -60.1 NC_001875.2 + 75348 0.66 0.686947
Target:  5'- gGCGUCggCGAUGGC-GUCGGCGUu-- -3'
miRNA:   3'- gCGCGGa-GUUGCCGcCGGCCGCAuuu -5'
7019 5' -60.1 NC_001875.2 + 75438 0.66 0.686947
Target:  5'- gGCGUCggCGAUGGC-GUCGGCGUu-- -3'
miRNA:   3'- gCGCGGa-GUUGCCGcCGGCCGCAuuu -5'
7019 5' -60.1 NC_001875.2 + 42197 0.66 0.676927
Target:  5'- gGCGUUUCAaauagcgcGCGGCGGCaC-GCGUGGu -3'
miRNA:   3'- gCGCGGAGU--------UGCCGCCG-GcCGCAUUu -5'
7019 5' -60.1 NC_001875.2 + 54170 0.66 0.676927
Target:  5'- aCGCGCUcggaCAGCGGCGcugcGuuGGCGUc-- -3'
miRNA:   3'- -GCGCGGa---GUUGCCGC----CggCCGCAuuu -5'
7019 5' -60.1 NC_001875.2 + 73642 0.66 0.676927
Target:  5'- gGCGgCUgCuGCGGCGGCugCGGCGg--- -3'
miRNA:   3'- gCGCgGA-GuUGCCGCCG--GCCGCauuu -5'
7019 5' -60.1 NC_001875.2 + 128297 0.66 0.676927
Target:  5'- aCGCGCC---ACGGC-GCCGGUGa--- -3'
miRNA:   3'- -GCGCGGaguUGCCGcCGGCCGCauuu -5'
7019 5' -60.1 NC_001875.2 + 108902 0.66 0.673913
Target:  5'- aCGCGCCUCAACGcGUuGGUggacgacauuaaagCGGCGc--- -3'
miRNA:   3'- -GCGCGGAGUUGC-CG-CCG--------------GCCGCauuu -5'
7019 5' -60.1 NC_001875.2 + 9085 0.66 0.66687
Target:  5'- uGCGCCUg--UGGCGaGUCGGCGcUAAAc -3'
miRNA:   3'- gCGCGGAguuGCCGC-CGGCCGC-AUUU- -5'
7019 5' -60.1 NC_001875.2 + 75552 0.66 0.66687
Target:  5'- aGCGUCggCGAUGGC-GUCGGCGUu-- -3'
miRNA:   3'- gCGCGGa-GUUGCCGcCGGCCGCAuuu -5'
7019 5' -60.1 NC_001875.2 + 92265 0.66 0.66687
Target:  5'- cCGUGCUgagCAGC-GCGGCCGGgaUGUAGu -3'
miRNA:   3'- -GCGCGGa--GUUGcCGCCGGCC--GCAUUu -5'
7019 5' -60.1 NC_001875.2 + 26164 0.66 0.656786
Target:  5'- gGCGCggugUGugGGUGGCCGGCa---- -3'
miRNA:   3'- gCGCGga--GUugCCGCCGGCCGcauuu -5'
7019 5' -60.1 NC_001875.2 + 93244 0.66 0.656786
Target:  5'- gCGCuCCUCGACGcGCaGCUGGCccguGUAGAg -3'
miRNA:   3'- -GCGcGGAGUUGC-CGcCGGCCG----CAUUU- -5'
7019 5' -60.1 NC_001875.2 + 113601 0.66 0.656786
Target:  5'- gGCGUUcgagUCGGCGGCGGgCCgcGGCGgcAAg -3'
miRNA:   3'- gCGCGG----AGUUGCCGCC-GG--CCGCauUU- -5'
7019 5' -60.1 NC_001875.2 + 7446 0.66 0.656786
Target:  5'- gCGCGCCggCGAUuGCGGC-GGUGUAc- -3'
miRNA:   3'- -GCGCGGa-GUUGcCGCCGgCCGCAUuu -5'
7019 5' -60.1 NC_001875.2 + 113980 0.66 0.653757
Target:  5'- uCGCGUgUCcgucaccgcaauguAAuCGGCGGCCGGCa---- -3'
miRNA:   3'- -GCGCGgAG--------------UU-GCCGCCGGCCGcauuu -5'
7019 5' -60.1 NC_001875.2 + 86210 0.67 0.646683
Target:  5'- gGCGCCgccgcaCAACuuGCGGCUGGUGUu-- -3'
miRNA:   3'- gCGCGGa-----GUUGc-CGCCGGCCGCAuuu -5'
7019 5' -60.1 NC_001875.2 + 90488 0.67 0.646683
Target:  5'- gCGCGCgUUCAaacuGCGcGCGGCCcacuugcacGGCGUAc- -3'
miRNA:   3'- -GCGCG-GAGU----UGC-CGCCGG---------CCGCAUuu -5'
7019 5' -60.1 NC_001875.2 + 56304 0.67 0.646683
Target:  5'- gGCGCC-CAagcguaugGCGGUGGCgGGCa---- -3'
miRNA:   3'- gCGCGGaGU--------UGCCGCCGgCCGcauuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.