miRNA display CGI


Results 21 - 40 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7020 3' -52.6 NC_001875.2 + 81009 0.67 0.924397
Target:  5'- -gGCGcGCGACGCGuuGCu---GCCGGUCu -3'
miRNA:   3'- aaUGU-CGCUGUGU--UGuacuCGGCCAG- -5'
7020 3' -52.6 NC_001875.2 + 31981 0.67 0.924397
Target:  5'- -aACAGCGuCGCGuugAUGAGgCCGGUg -3'
miRNA:   3'- aaUGUCGCuGUGUug-UACUC-GGCCAg -5'
7020 3' -52.6 NC_001875.2 + 59585 0.67 0.924397
Target:  5'- cUGCAGCGugGcCGACGUgcgcGAGCaCGGg- -3'
miRNA:   3'- aAUGUCGCugU-GUUGUA----CUCG-GCCag -5'
7020 3' -52.6 NC_001875.2 + 32396 0.67 0.924397
Target:  5'- -gGCGGCGACGCAAaaguuGUGGGCgaCGG-Cg -3'
miRNA:   3'- aaUGUCGCUGUGUUg----UACUCG--GCCaG- -5'
7020 3' -52.6 NC_001875.2 + 44540 0.67 0.918554
Target:  5'- -aGCAGCGucGCGCGGCGU--GCCGGg- -3'
miRNA:   3'- aaUGUCGC--UGUGUUGUAcuCGGCCag -5'
7020 3' -52.6 NC_001875.2 + 130016 0.67 0.918554
Target:  5'- -gGCGGCGGCgGCGGCAUGcuCgUGGUCa -3'
miRNA:   3'- aaUGUCGCUG-UGUUGUACucG-GCCAG- -5'
7020 3' -52.6 NC_001875.2 + 130064 0.67 0.918554
Target:  5'- -gGCGGCGGCgGCGGCAUGcuCgUGGUCa -3'
miRNA:   3'- aaUGUCGCUG-UGUUGUACucG-GCCAG- -5'
7020 3' -52.6 NC_001875.2 + 89810 0.67 0.918554
Target:  5'- -cGCgGGCGGCAgAuCGUGGuGCCGGUUa -3'
miRNA:   3'- aaUG-UCGCUGUgUuGUACU-CGGCCAG- -5'
7020 3' -52.6 NC_001875.2 + 74648 0.67 0.918554
Target:  5'- -gGCAGCGugcCAUGGCcgGGGCUGGg- -3'
miRNA:   3'- aaUGUCGCu--GUGUUGuaCUCGGCCag -5'
7020 3' -52.6 NC_001875.2 + 33919 0.67 0.918554
Target:  5'- gUGCAGCGACACGugAgguggcccagcuUGcGCCGcGUUu -3'
miRNA:   3'- aAUGUCGCUGUGUugU------------ACuCGGC-CAG- -5'
7020 3' -52.6 NC_001875.2 + 3067 0.68 0.908658
Target:  5'- -cGCAGCGGCGCGccggggucgcccacgGCGUGcacgcGCCGGg- -3'
miRNA:   3'- aaUGUCGCUGUGU---------------UGUACu----CGGCCag -5'
7020 3' -52.6 NC_001875.2 + 19948 0.68 0.892569
Target:  5'- -aGCGGcCGGCGCGACGguccGGCCGG-Cg -3'
miRNA:   3'- aaUGUC-GCUGUGUUGUac--UCGGCCaG- -5'
7020 3' -52.6 NC_001875.2 + 94626 0.68 0.892569
Target:  5'- -aGCGGCGGCACAACGUGAuaCa--- -3'
miRNA:   3'- aaUGUCGCUGUGUUGUACUcgGccag -5'
7020 3' -52.6 NC_001875.2 + 63022 0.68 0.885433
Target:  5'- -gGCAGCGcaaAUACAGCGUGGGauGGUg -3'
miRNA:   3'- aaUGUCGC---UGUGUUGUACUCggCCAg -5'
7020 3' -52.6 NC_001875.2 + 34934 0.69 0.878049
Target:  5'- gUGCGGCGugACAACAacccgGAGCUGu-- -3'
miRNA:   3'- aAUGUCGCugUGUUGUa----CUCGGCcag -5'
7020 3' -52.6 NC_001875.2 + 129554 0.69 0.868089
Target:  5'- -cACGGCgGGC-CGGCGUuuuguaauuguaucGAGCCGGUCc -3'
miRNA:   3'- aaUGUCG-CUGuGUUGUA--------------CUCGGCCAG- -5'
7020 3' -52.6 NC_001875.2 + 49639 0.69 0.854468
Target:  5'- -aGCGGCGACACgAGCGgccGCCGG-Cg -3'
miRNA:   3'- aaUGUCGCUGUG-UUGUacuCGGCCaG- -5'
7020 3' -52.6 NC_001875.2 + 42213 0.69 0.854468
Target:  5'- -cGCGGCGGCACG-CGUGGuGCUuGUCa -3'
miRNA:   3'- aaUGUCGCUGUGUuGUACU-CGGcCAG- -5'
7020 3' -52.6 NC_001875.2 + 128949 0.69 0.837624
Target:  5'- -cACgAGCGGCuaaGGCGUGAGCUGGg- -3'
miRNA:   3'- aaUG-UCGCUGug-UUGUACUCGGCCag -5'
7020 3' -52.6 NC_001875.2 + 42743 0.7 0.819954
Target:  5'- -cGCGGCGACgcGCAugGUGAGCggcgcgcucgGGUCg -3'
miRNA:   3'- aaUGUCGCUG--UGUugUACUCGg---------CCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.