miRNA display CGI


Results 21 - 40 of 531 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7020 5' -57.1 NC_001875.2 + 8433 0.66 0.870071
Target:  5'- uUCAACGCGaCCCAUGaacaCggCCAAauGCg -3'
miRNA:   3'- -GGUUGCGC-GGGUGCg---GuaGGUUggCG- -5'
7020 5' -57.1 NC_001875.2 + 104163 0.66 0.870071
Target:  5'- -aGACGCGUCCGacauUGUCAaCUAucGCCGCg -3'
miRNA:   3'- ggUUGCGCGGGU----GCGGUaGGU--UGGCG- -5'
7020 5' -57.1 NC_001875.2 + 71601 0.66 0.870071
Target:  5'- uCUAGCGCGCUCGUGCUcgCCAuUUGUu -3'
miRNA:   3'- -GGUUGCGCGGGUGCGGuaGGUuGGCG- -5'
7020 5' -57.1 NC_001875.2 + 58892 0.66 0.870071
Target:  5'- gCCGugGCGCCCgaaACGCUGcagaUCGACaGCg -3'
miRNA:   3'- -GGUugCGCGGG---UGCGGUa---GGUUGgCG- -5'
7020 5' -57.1 NC_001875.2 + 94010 0.66 0.870071
Target:  5'- gCAGCGUGUCgUACGUgAUCgCcACCGCc -3'
miRNA:   3'- gGUUGCGCGG-GUGCGgUAG-GuUGGCG- -5'
7020 5' -57.1 NC_001875.2 + 58902 0.66 0.870071
Target:  5'- gCgAACGCGCgCUACgaaGCCGcggacgCCAagaGCCGCg -3'
miRNA:   3'- -GgUUGCGCG-GGUG---CGGUa-----GGU---UGGCG- -5'
7020 5' -57.1 NC_001875.2 + 78326 0.66 0.870071
Target:  5'- gCCAACGagaaccuaGCUCACaugg-CCAACCGCa -3'
miRNA:   3'- -GGUUGCg-------CGGGUGcgguaGGUUGGCG- -5'
7020 5' -57.1 NC_001875.2 + 110450 0.66 0.870071
Target:  5'- aCCaAAUGCGCUUggaGCUGgguaaggCCAACCGCa -3'
miRNA:   3'- -GG-UUGCGCGGGug-CGGUa------GGUUGGCG- -5'
7020 5' -57.1 NC_001875.2 + 54408 0.66 0.870071
Target:  5'- aCGGCuCGUCCAUGCCGcUCUugUCGCc -3'
miRNA:   3'- gGUUGcGCGGGUGCGGU-AGGuuGGCG- -5'
7020 5' -57.1 NC_001875.2 + 61493 0.66 0.870071
Target:  5'- cCCuuuuGCGCGCCggcucgGCGCCgcaGUCCGcguGCuCGCg -3'
miRNA:   3'- -GGu---UGCGCGGg-----UGCGG---UAGGU---UG-GCG- -5'
7020 5' -57.1 NC_001875.2 + 37430 0.66 0.870071
Target:  5'- gCCGugGCGCaguCgGCgGCCAaaUAGCCGCc -3'
miRNA:   3'- -GGUugCGCG---GgUG-CGGUagGUUGGCG- -5'
7020 5' -57.1 NC_001875.2 + 100674 0.66 0.870071
Target:  5'- gCGGCGCGUUagCACaCUGUCCGAcuCCGCg -3'
miRNA:   3'- gGUUGCGCGG--GUGcGGUAGGUU--GGCG- -5'
7020 5' -57.1 NC_001875.2 + 63134 0.66 0.870071
Target:  5'- gCCGggcGCGCgGCCgGCGCacggGUCCAcggGCaCGCa -3'
miRNA:   3'- -GGU---UGCG-CGGgUGCGg---UAGGU---UG-GCG- -5'
7020 5' -57.1 NC_001875.2 + 79536 0.66 0.870071
Target:  5'- gUguAUGCGCCacaGCGCaaaggCCAGCgGCa -3'
miRNA:   3'- -GguUGCGCGGg--UGCGgua--GGUUGgCG- -5'
7020 5' -57.1 NC_001875.2 + 18765 0.66 0.870071
Target:  5'- gCUGACGCGCgU-CGCCAUCaaaGCCaGCu -3'
miRNA:   3'- -GGUUGCGCGgGuGCGGUAGgu-UGG-CG- -5'
7020 5' -57.1 NC_001875.2 + 34993 0.66 0.869339
Target:  5'- -aGugGCGCCCAugacgcuCGCCGagUUCGAUCGg -3'
miRNA:   3'- ggUugCGCGGGU-------GCGGU--AGGUUGGCg -5'
7020 5' -57.1 NC_001875.2 + 127051 0.66 0.869339
Target:  5'- aCAGgGCGCCgGCuguaauagucaaaGCCGcggCCAACgGCg -3'
miRNA:   3'- gGUUgCGCGGgUG-------------CGGUa--GGUUGgCG- -5'
7020 5' -57.1 NC_001875.2 + 120841 0.66 0.869339
Target:  5'- aCCAugggcacGCGCGCCUgcaGCGCUucGUCgCuuGACUGCa -3'
miRNA:   3'- -GGU-------UGCGCGGG---UGCGG--UAG-G--UUGGCG- -5'
7020 5' -57.1 NC_001875.2 + 131566 0.66 0.867131
Target:  5'- gCCAGCauGCGgCgACGCCAgcaauacaacgacCCcGCCGCg -3'
miRNA:   3'- -GGUUG--CGCgGgUGCGGUa------------GGuUGGCG- -5'
7020 5' -57.1 NC_001875.2 + 3392 0.66 0.865648
Target:  5'- -aGGCGCGUCC-UGUuccgauaaggaguugCGUCCGGCUGCg -3'
miRNA:   3'- ggUUGCGCGGGuGCG---------------GUAGGUUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.