miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7021 5' -49.9 NC_001875.2 + 2884 0.66 0.994913
Target:  5'- cCGCUCGCCCagcucacgccuuaGCCgCUcGUgc--CUAUUCa -3'
miRNA:   3'- -GCGAGCGGG-------------UGG-GA-CAauuuGAUAAG- -5'
7021 5' -49.9 NC_001875.2 + 83083 0.66 0.994158
Target:  5'- uCGCUUGCCCACCaCgucguacGUgcuACUGUg- -3'
miRNA:   3'- -GCGAGCGGGUGG-Ga------CAauuUGAUAag -5'
7021 5' -49.9 NC_001875.2 + 73022 0.66 0.992159
Target:  5'- uCGCcgUUGCCCGCCUgguaguUGUUGucGACUacGUUCg -3'
miRNA:   3'- -GCG--AGCGGGUGGG------ACAAU--UUGA--UAAG- -5'
7021 5' -49.9 NC_001875.2 + 21329 0.67 0.988183
Target:  5'- gCGCgggGCCCGCCUUGUUGAcgaGCa---- -3'
miRNA:   3'- -GCGag-CGGGUGGGACAAUU---UGauaag -5'
7021 5' -49.9 NC_001875.2 + 69615 0.68 0.980643
Target:  5'- gCGCgCGUCCACCCUGUcca--UcgUCg -3'
miRNA:   3'- -GCGaGCGGGUGGGACAauuugAuaAG- -5'
7021 5' -49.9 NC_001875.2 + 51234 0.68 0.980643
Target:  5'- cCGCgCGCCCACCgUGac-GACcAUUCu -3'
miRNA:   3'- -GCGaGCGGGUGGgACaauUUGaUAAG- -5'
7021 5' -49.9 NC_001875.2 + 107413 0.68 0.97574
Target:  5'- aCGC-CGCCCuGCUUUGUgggugAGAUUGUUCu -3'
miRNA:   3'- -GCGaGCGGG-UGGGACAa----UUUGAUAAG- -5'
7021 5' -49.9 NC_001875.2 + 66746 0.68 0.972973
Target:  5'- uGCUUGgCCGCCUcGUUGAGCgcgUCc -3'
miRNA:   3'- gCGAGCgGGUGGGaCAAUUUGauaAG- -5'
7021 5' -49.9 NC_001875.2 + 90988 0.7 0.93207
Target:  5'- cCGUUUGCCCACUCUuugcGUUGAGCg---- -3'
miRNA:   3'- -GCGAGCGGGUGGGA----CAAUUUGauaag -5'
7021 5' -49.9 NC_001875.2 + 116744 0.7 0.93207
Target:  5'- gCGCUgGCCCACCUgaUGgcggGAGCUGc-- -3'
miRNA:   3'- -GCGAgCGGGUGGG--ACaa--UUUGAUaag -5'
7021 5' -49.9 NC_001875.2 + 27124 0.71 0.920767
Target:  5'- aCGCacaUUGCCacaGCCCUGUUuAGCUcgUCc -3'
miRNA:   3'- -GCG---AGCGGg--UGGGACAAuUUGAuaAG- -5'
7021 5' -49.9 NC_001875.2 + 110861 0.71 0.908394
Target:  5'- aGgaCGCCCaaACCCUGgcGGACUAUa- -3'
miRNA:   3'- gCgaGCGGG--UGGGACaaUUUGAUAag -5'
7021 5' -49.9 NC_001875.2 + 82504 0.72 0.880504
Target:  5'- cCGC-CGCCCACgCUGcagGAACUGUg- -3'
miRNA:   3'- -GCGaGCGGGUGgGACaa-UUUGAUAag -5'
7021 5' -49.9 NC_001875.2 + 131149 0.72 0.8729
Target:  5'- aGCUCGCCCACCgcuugggcaaUUGUgaUGGACUAc-- -3'
miRNA:   3'- gCGAGCGGGUGG----------GACA--AUUUGAUaag -5'
7021 5' -49.9 NC_001875.2 + 98579 0.75 0.744737
Target:  5'- uGC-CGCCguCCCUGUUccAGCUGUUCa -3'
miRNA:   3'- gCGaGCGGguGGGACAAu-UUGAUAAG- -5'
7021 5' -49.9 NC_001875.2 + 128987 1.12 0.006193
Target:  5'- gCGCUCGCCCACCCUGUUAAACUAUUCg -3'
miRNA:   3'- -GCGAGCGGGUGGGACAAUUUGAUAAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.