miRNA display CGI


Results 21 - 40 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7022 3' -58.1 NC_001875.2 + 36586 0.66 0.794589
Target:  5'- cGAGCuuguauCGGcGCGUGuACGGUUAGcGCUc -3'
miRNA:   3'- aCUCGu-----GCCaCGCGC-UGUCAGUC-CGG- -5'
7022 3' -58.1 NC_001875.2 + 36804 0.69 0.597307
Target:  5'- --uGCACGGUGCGCGuuacgcgccgcgGCAGUUGcGcGCCc -3'
miRNA:   3'- acuCGUGCCACGCGC------------UGUCAGU-C-CGG- -5'
7022 3' -58.1 NC_001875.2 + 39665 0.67 0.708741
Target:  5'- uUGGGCcgGCGGcGCGCGGCGG-CGaGCUg -3'
miRNA:   3'- -ACUCG--UGCCaCGCGCUGUCaGUcCGG- -5'
7022 3' -58.1 NC_001875.2 + 41608 0.74 0.357695
Target:  5'- cGGGCGCGG-GCGCGGgcauCGGuaUCGGGUCg -3'
miRNA:   3'- aCUCGUGCCaCGCGCU----GUC--AGUCCGG- -5'
7022 3' -58.1 NC_001875.2 + 41993 0.67 0.757501
Target:  5'- uUGAGCACGGcgGUGaaaaaauCGG-CGGGCCc -3'
miRNA:   3'- -ACUCGUGCCa-CGCgcu----GUCaGUCCGG- -5'
7022 3' -58.1 NC_001875.2 + 42751 0.68 0.668518
Target:  5'- cGcGCAUGGUGaGCGGCGcGcUCGGGUCg -3'
miRNA:   3'- aCuCGUGCCACgCGCUGU-C-AGUCCGG- -5'
7022 3' -58.1 NC_001875.2 + 42978 0.74 0.357695
Target:  5'- -cAGCACGGUGUGCGuCuugauGUUGGGCUg -3'
miRNA:   3'- acUCGUGCCACGCGCuGu----CAGUCCGG- -5'
7022 3' -58.1 NC_001875.2 + 43590 0.7 0.587176
Target:  5'- cGAGUACGGcgGCaGCGGCGGcgCGcGCCg -3'
miRNA:   3'- aCUCGUGCCa-CG-CGCUGUCa-GUcCGG- -5'
7022 3' -58.1 NC_001875.2 + 50335 0.68 0.678639
Target:  5'- cGAGC-UGGUgGUGuCGGCGucguuggcGUCGGGCCg -3'
miRNA:   3'- aCUCGuGCCA-CGC-GCUGU--------CAGUCCGG- -5'
7022 3' -58.1 NC_001875.2 + 56462 0.66 0.794589
Target:  5'- -uGGCGgGGUccgcGCGCGuguUGGUCAGcGCCa -3'
miRNA:   3'- acUCGUgCCA----CGCGCu--GUCAGUC-CGG- -5'
7022 3' -58.1 NC_001875.2 + 57801 0.66 0.7763
Target:  5'- aGcAGCGCGGUuuuuaGCGCGGCAaUCuuguGcGCCg -3'
miRNA:   3'- aC-UCGUGCCA-----CGCGCUGUcAGu---C-CGG- -5'
7022 3' -58.1 NC_001875.2 + 59606 0.68 0.658367
Target:  5'- cGAGCACGG-GCGCuuuGGCGGauuGGCg -3'
miRNA:   3'- aCUCGUGCCaCGCG---CUGUCaguCCGg -5'
7022 3' -58.1 NC_001875.2 + 59903 0.72 0.451388
Target:  5'- cUGcGCGCGGaGCGCG-CGGUCAaGGCg -3'
miRNA:   3'- -ACuCGUGCCaCGCGCuGUCAGU-CCGg -5'
7022 3' -58.1 NC_001875.2 + 61551 0.66 0.794589
Target:  5'- gUGGGaCACGGUGCGUuGGCAGgu--GCUg -3'
miRNA:   3'- -ACUC-GUGCCACGCG-CUGUCagucCGG- -5'
7022 3' -58.1 NC_001875.2 + 62349 0.67 0.722605
Target:  5'- gUGGGCGCGGcgccaguuugggucGCGCGcCAGggAGGUCg -3'
miRNA:   3'- -ACUCGUGCCa-------------CGCGCuGUCagUCCGG- -5'
7022 3' -58.1 NC_001875.2 + 65782 0.71 0.527291
Target:  5'- cGAGCACGc-GCGCGGC-GUCGGcGCg -3'
miRNA:   3'- aCUCGUGCcaCGCGCUGuCAGUC-CGg -5'
7022 3' -58.1 NC_001875.2 + 67156 0.66 0.794589
Target:  5'- cUGucuGCGCGGgacaGCGUGguggacaccGCGGUCGGGUa -3'
miRNA:   3'- -ACu--CGUGCCa---CGCGC---------UGUCAGUCCGg -5'
7022 3' -58.1 NC_001875.2 + 70039 0.74 0.373688
Target:  5'- uUGAuuGUGCGGUcGCuGCGACGGaCGGGCCu -3'
miRNA:   3'- -ACU--CGUGCCA-CG-CGCUGUCaGUCCGG- -5'
7022 3' -58.1 NC_001875.2 + 72571 0.75 0.298624
Target:  5'- cGGGCGCGG-GCGCuGCGGgugCGGGCg -3'
miRNA:   3'- aCUCGUGCCaCGCGcUGUCa--GUCCGg -5'
7022 3' -58.1 NC_001875.2 + 73722 0.67 0.738263
Target:  5'- uUGGGguUGGUcgggaggugGCuGCGGCGGUUguugGGGCCa -3'
miRNA:   3'- -ACUCguGCCA---------CG-CGCUGUCAG----UCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.