miRNA display CGI


Results 21 - 40 of 80 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7022 3' -58.1 NC_001875.2 + 114503 0.67 0.747932
Target:  5'- cUGA-CGCGGUcGCGCGGCGGcgCAaccGCCa -3'
miRNA:   3'- -ACUcGUGCCA-CGCGCUGUCa-GUc--CGG- -5'
7022 3' -58.1 NC_001875.2 + 124720 0.67 0.747932
Target:  5'- -uGGCaaGCGGcGCGUGGCGGUCAaugucGGCa -3'
miRNA:   3'- acUCG--UGCCaCGCGCUGUCAGU-----CCGg -5'
7022 3' -58.1 NC_001875.2 + 2540 0.67 0.747932
Target:  5'- cGGGC-CGGUGaacaaCGGCGcGUCGGGCg -3'
miRNA:   3'- aCUCGuGCCACgc---GCUGU-CAGUCCGg -5'
7022 3' -58.1 NC_001875.2 + 73722 0.67 0.738263
Target:  5'- uUGGGguUGGUcgggaggugGCuGCGGCGGUUguugGGGCCa -3'
miRNA:   3'- -ACUCguGCCA---------CG-CGCUGUCAG----UCCGG- -5'
7022 3' -58.1 NC_001875.2 + 9967 0.67 0.738263
Target:  5'- -cAGCGUGGUGCaauUGACGGcgugCAGGCCa -3'
miRNA:   3'- acUCGUGCCACGc--GCUGUCa---GUCCGG- -5'
7022 3' -58.1 NC_001875.2 + 108833 0.67 0.738263
Target:  5'- cUGAaCACGGUGCGCGcccaaaacgcGCAGaUCuuGGCg -3'
miRNA:   3'- -ACUcGUGCCACGCGC----------UGUC-AGu-CCGg -5'
7022 3' -58.1 NC_001875.2 + 3148 0.67 0.728501
Target:  5'- --uGCGCGGa-CGCGGC-GUCGGGCg -3'
miRNA:   3'- acuCGUGCCacGCGCUGuCAGUCCGg -5'
7022 3' -58.1 NC_001875.2 + 32925 0.67 0.728501
Target:  5'- cGAGCACuuGGUgaGCGCGuCAGUUugcGcGCCg -3'
miRNA:   3'- aCUCGUG--CCA--CGCGCuGUCAGu--C-CGG- -5'
7022 3' -58.1 NC_001875.2 + 7386 0.67 0.728501
Target:  5'- -cGGCcacGCGGuUGCGCGACgcGGUCgcaaaacauauuGGGCCc -3'
miRNA:   3'- acUCG---UGCC-ACGCGCUG--UCAG------------UCCGG- -5'
7022 3' -58.1 NC_001875.2 + 85284 0.67 0.728501
Target:  5'- cGAaCACGGUuuGCGCgGGCGGcgCGGGCg -3'
miRNA:   3'- aCUcGUGCCA--CGCG-CUGUCa-GUCCGg -5'
7022 3' -58.1 NC_001875.2 + 62349 0.67 0.722605
Target:  5'- gUGGGCGCGGcgccaguuugggucGCGCGcCAGggAGGUCg -3'
miRNA:   3'- -ACUCGUGCCa-------------CGCGCuGUCagUCCGG- -5'
7022 3' -58.1 NC_001875.2 + 117338 0.67 0.718658
Target:  5'- -cGGCGCGGcGCggGCGAacCGG-CGGGCCg -3'
miRNA:   3'- acUCGUGCCaCG--CGCU--GUCaGUCCGG- -5'
7022 3' -58.1 NC_001875.2 + 113564 0.67 0.717669
Target:  5'- -cGGCGCGGUcGCGC-ACGGcgcgccaUUGGGCCa -3'
miRNA:   3'- acUCGUGCCA-CGCGcUGUC-------AGUCCGG- -5'
7022 3' -58.1 NC_001875.2 + 39665 0.67 0.708741
Target:  5'- uUGGGCcgGCGGcGCGCGGCGG-CGaGCUg -3'
miRNA:   3'- -ACUCG--UGCCaCGCGCUGUCaGUcCGG- -5'
7022 3' -58.1 NC_001875.2 + 12380 0.67 0.708741
Target:  5'- aGGGUgccACGGUGcCGCucgucGUCGGGCCg -3'
miRNA:   3'- aCUCG---UGCCAC-GCGcugu-CAGUCCGG- -5'
7022 3' -58.1 NC_001875.2 + 9794 0.68 0.698759
Target:  5'- cGGGCACuGcGCGUGcACAGUaacguuGGGCCg -3'
miRNA:   3'- aCUCGUGcCaCGCGC-UGUCAg-----UCCGG- -5'
7022 3' -58.1 NC_001875.2 + 89789 0.68 0.688722
Target:  5'- cGuGCAC-GUGCGCGaacGCAGcgCGGGCg -3'
miRNA:   3'- aCuCGUGcCACGCGC---UGUCa-GUCCGg -5'
7022 3' -58.1 NC_001875.2 + 22560 0.68 0.678639
Target:  5'- uUGAGCGCucGGUuuuaacgcccggGCGCGGCGcGUU-GGCCg -3'
miRNA:   3'- -ACUCGUG--CCA------------CGCGCUGU-CAGuCCGG- -5'
7022 3' -58.1 NC_001875.2 + 50335 0.68 0.678639
Target:  5'- cGAGC-UGGUgGUGuCGGCGucguuggcGUCGGGCCg -3'
miRNA:   3'- aCUCGuGCCA-CGC-GCUGU--------CAGUCCGG- -5'
7022 3' -58.1 NC_001875.2 + 32772 0.68 0.668518
Target:  5'- cGAGCGCGuccucGCGCGGCGuGggCGGGCg -3'
miRNA:   3'- aCUCGUGCca---CGCGCUGU-Ca-GUCCGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.