Results 21 - 25 of 25 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7022 | 5' | -57.9 | NC_001875.2 | + | 11994 | 0.7 | 0.530865 |
Target: 5'- uUGGGCGCGGgUGUgGuGGCgagcgcggCCAACAa -3' miRNA: 3'- -ACCCGCGUCgACAgC-CUGa-------GGUUGUa -5' |
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7022 | 5' | -57.9 | NC_001875.2 | + | 105838 | 0.71 | 0.481819 |
Target: 5'- ---aCGCGGCUGUUGGGgUCCAGCGa -3' miRNA: 3'- acccGCGUCGACAGCCUgAGGUUGUa -5' |
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7022 | 5' | -57.9 | NC_001875.2 | + | 97537 | 0.72 | 0.425144 |
Target: 5'- gUGGGCGCguuugguggccauGGCUGUCGGGCUgucaCUGACu- -3' miRNA: 3'- -ACCCGCG-------------UCGACAGCCUGA----GGUUGua -5' |
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7022 | 5' | -57.9 | NC_001875.2 | + | 43649 | 0.72 | 0.399629 |
Target: 5'- aGGuGuCGUAGCUGUCGGGCagCGGCAc -3' miRNA: 3'- aCC-C-GCGUCGACAGCCUGagGUUGUa -5' |
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7022 | 5' | -57.9 | NC_001875.2 | + | 129464 | 1.06 | 0.002157 |
Target: 5'- cUGGGCGCAGCUGUCGGACUCCAACAUg -3' miRNA: 3'- -ACCCGCGUCGACAGCCUGAGGUUGUA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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