Results 1 - 20 of 68 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7023 | 3' | -58.1 | NC_001875.2 | + | 12326 | 0.66 | 0.80927 |
Target: 5'- aCGCGCCCGGccAGCgAGaGGUCGUguuugacggcuuCGCc -3' miRNA: 3'- -GCGUGGGCUuuUCG-UC-CCAGCG------------GCGa -5' |
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7023 | 3' | -58.1 | NC_001875.2 | + | 79691 | 0.66 | 0.80927 |
Target: 5'- gGCACUCGAGgucgauGAGCGaguuGGGcCGCgGCa -3' miRNA: 3'- gCGUGGGCUU------UUCGU----CCCaGCGgCGa -5' |
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7023 | 3' | -58.1 | NC_001875.2 | + | 4560 | 0.66 | 0.80927 |
Target: 5'- gCGCACgUCGgcAAGCAauGUUGCCGCg -3' miRNA: 3'- -GCGUG-GGCuuUUCGUccCAGCGGCGa -5' |
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7023 | 3' | -58.1 | NC_001875.2 | + | 130427 | 0.66 | 0.80927 |
Target: 5'- aCGCACCgCuAAAaauAGCacaccAGGG-CGCCGCUg -3' miRNA: 3'- -GCGUGG-GcUUU---UCG-----UCCCaGCGGCGA- -5' |
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7023 | 3' | -58.1 | NC_001875.2 | + | 15090 | 0.66 | 0.795047 |
Target: 5'- aGCGCCUGGuuGAGGCGGGGUuuuucuaccaguaugUGuuuCCGCUu -3' miRNA: 3'- gCGUGGGCU--UUUCGUCCCA---------------GC---GGCGA- -5' |
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7023 | 3' | -58.1 | NC_001875.2 | + | 47630 | 0.66 | 0.791432 |
Target: 5'- gCGUACCUauGAAGGCAGGG-CGCaagGCUc -3' miRNA: 3'- -GCGUGGGc-UUUUCGUCCCaGCGg--CGA- -5' |
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7023 | 3' | -58.1 | NC_001875.2 | + | 128705 | 0.66 | 0.791432 |
Target: 5'- cCGCGUCCGcgcAGCGGGcuUCGCCGCc -3' miRNA: 3'- -GCGUGGGCuuuUCGUCCc-AGCGGCGa -5' |
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7023 | 3' | -58.1 | NC_001875.2 | + | 7020 | 0.66 | 0.791432 |
Target: 5'- aGUugCUGGAcguAAGCGaGGUgGCCGCg -3' miRNA: 3'- gCGugGGCUU---UUCGUcCCAgCGGCGa -5' |
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7023 | 3' | -58.1 | NC_001875.2 | + | 33545 | 0.66 | 0.782295 |
Target: 5'- aGCACgCGuu-GGCcacaguGcGGUCGCCGCg -3' miRNA: 3'- gCGUGgGCuuuUCGu-----C-CCAGCGGCGa -5' |
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7023 | 3' | -58.1 | NC_001875.2 | + | 69994 | 0.66 | 0.782295 |
Target: 5'- aGCACCgCGAGGauaaauAGCAGGaaaacgugCGCCGUg -3' miRNA: 3'- gCGUGG-GCUUU------UCGUCCca------GCGGCGa -5' |
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7023 | 3' | -58.1 | NC_001875.2 | + | 68836 | 0.66 | 0.782295 |
Target: 5'- gCGCugCCu---GGCGgacGGGUCGCaCGCg -3' miRNA: 3'- -GCGugGGcuuuUCGU---CCCAGCG-GCGa -5' |
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7023 | 3' | -58.1 | NC_001875.2 | + | 38542 | 0.66 | 0.782295 |
Target: 5'- uGCAgCUCGu--GGCcGGGUUGCUGCg -3' miRNA: 3'- gCGU-GGGCuuuUCGuCCCAGCGGCGa -5' |
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7023 | 3' | -58.1 | NC_001875.2 | + | 110164 | 0.66 | 0.763627 |
Target: 5'- uCGCGCUCGucGGGCGGcGUCGCacugCGCUc -3' miRNA: 3'- -GCGUGGGCuuUUCGUCcCAGCG----GCGA- -5' |
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7023 | 3' | -58.1 | NC_001875.2 | + | 42969 | 0.66 | 0.763627 |
Target: 5'- gCGCGCCaacaaugcuuUGAAAGGCGGcGGcCGuuGCg -3' miRNA: 3'- -GCGUGG----------GCUUUUCGUC-CCaGCggCGa -5' |
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7023 | 3' | -58.1 | NC_001875.2 | + | 37774 | 0.66 | 0.763627 |
Target: 5'- gCGCAUguuuauggagCUGAAAcAGCAGGugugucguuuGUCGCCGCg -3' miRNA: 3'- -GCGUG----------GGCUUU-UCGUCC----------CAGCGGCGa -5' |
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7023 | 3' | -58.1 | NC_001875.2 | + | 83564 | 0.67 | 0.757933 |
Target: 5'- gGCACgCGGcgGAcacaugaggugucccGGCGGGG-CGCCGCc -3' miRNA: 3'- gCGUGgGCU--UU---------------UCGUCCCaGCGGCGa -5' |
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7023 | 3' | -58.1 | NC_001875.2 | + | 21086 | 0.67 | 0.754115 |
Target: 5'- aCGCGC------GGCGGcGGUCGCCGCg -3' miRNA: 3'- -GCGUGggcuuuUCGUC-CCAGCGGCGa -5' |
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7023 | 3' | -58.1 | NC_001875.2 | + | 7253 | 0.67 | 0.754115 |
Target: 5'- cCGCGCUgcagCGGccuGGCGcGGGUCGCCGaCg -3' miRNA: 3'- -GCGUGG----GCUuu-UCGU-CCCAGCGGC-Ga -5' |
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7023 | 3' | -58.1 | NC_001875.2 | + | 61634 | 0.67 | 0.754115 |
Target: 5'- gGCGCCuCGGGcgccCAGuGGUCGCCGUc -3' miRNA: 3'- gCGUGG-GCUUuuc-GUC-CCAGCGGCGa -5' |
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7023 | 3' | -58.1 | NC_001875.2 | + | 5914 | 0.67 | 0.744495 |
Target: 5'- aGCGCCgGcauGGCGuuGGGUagCGCCGCg -3' miRNA: 3'- gCGUGGgCuuuUCGU--CCCA--GCGGCGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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