miRNA display CGI


Results 21 - 40 of 101 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7023 5' -46.1 NC_001875.2 + 102731 0.67 0.999626
Target:  5'- uGGAUAGCgaccuuaaagucuGCGCgGCCUUUgCAcGAGCGc -3'
miRNA:   3'- uUUUAUCG-------------UGCG-CGGAAA-GUuUUCGC- -5'
7023 5' -46.1 NC_001875.2 + 42237 0.67 0.999536
Target:  5'- -cAAUGuGCACGCGCacguUUUguAAAGCGu -3'
miRNA:   3'- uuUUAU-CGUGCGCGg---AAAguUUUCGC- -5'
7023 5' -46.1 NC_001875.2 + 6196 0.67 0.999536
Target:  5'- ------cCGCGCGCCgUUUCAAAGcGCGc -3'
miRNA:   3'- uuuuaucGUGCGCGG-AAAGUUUU-CGC- -5'
7023 5' -46.1 NC_001875.2 + 20647 0.67 0.999536
Target:  5'- aAAAAcGGCGCGCGCCg--Ccc-AGCGc -3'
miRNA:   3'- -UUUUaUCGUGCGCGGaaaGuuuUCGC- -5'
7023 5' -46.1 NC_001875.2 + 34113 0.67 0.999536
Target:  5'- ----gAGCGCGCGCgCUcgCGGucuAGCGc -3'
miRNA:   3'- uuuuaUCGUGCGCG-GAaaGUUu--UCGC- -5'
7023 5' -46.1 NC_001875.2 + 113164 0.67 0.999536
Target:  5'- -----cGCGCGCGCCgUUUGAuauGGCa -3'
miRNA:   3'- uuuuauCGUGCGCGGaAAGUUu--UCGc -5'
7023 5' -46.1 NC_001875.2 + 88863 0.67 0.999536
Target:  5'- ----cGGC-CGcCGCCUUUCA-AAGCa -3'
miRNA:   3'- uuuuaUCGuGC-GCGGAAAGUuUUCGc -5'
7023 5' -46.1 NC_001875.2 + 62620 0.67 0.999536
Target:  5'- ----cAGCGCGCGUCgccCGAacAAGCGu -3'
miRNA:   3'- uuuuaUCGUGCGCGGaaaGUU--UUCGC- -5'
7023 5' -46.1 NC_001875.2 + 50846 0.67 0.999536
Target:  5'- -----cGuCGCGCGCCUUuuUCAGcAGCa -3'
miRNA:   3'- uuuuauC-GUGCGCGGAA--AGUUuUCGc -5'
7023 5' -46.1 NC_001875.2 + 9639 0.67 0.999525
Target:  5'- -----uGCGCGCGCCgugcgugUUUCGcGAGCu -3'
miRNA:   3'- uuuuauCGUGCGCGG-------AAAGUuUUCGc -5'
7023 5' -46.1 NC_001875.2 + 32793 0.67 0.999415
Target:  5'- uGGGcgGGCGcCGCGCCgg-CAAGcucGGCGa -3'
miRNA:   3'- -UUUuaUCGU-GCGCGGaaaGUUU---UCGC- -5'
7023 5' -46.1 NC_001875.2 + 56343 0.67 0.999415
Target:  5'- ----cGGUAUGCGCCUgcgacgCAGgcGCGa -3'
miRNA:   3'- uuuuaUCGUGCGCGGAaa----GUUuuCGC- -5'
7023 5' -46.1 NC_001875.2 + 90387 0.67 0.999267
Target:  5'- -----cGCGCGCGCCg--CAAccGGCGc -3'
miRNA:   3'- uuuuauCGUGCGCGGaaaGUUu-UCGC- -5'
7023 5' -46.1 NC_001875.2 + 99575 0.67 0.999267
Target:  5'- uAAGAUAcGCGCGCGUaua--AAAGGCGg -3'
miRNA:   3'- -UUUUAU-CGUGCGCGgaaagUUUUCGC- -5'
7023 5' -46.1 NC_001875.2 + 15085 0.67 0.999267
Target:  5'- -----cGCGCaGCGCCUgguuGAGGCGg -3'
miRNA:   3'- uuuuauCGUG-CGCGGAaaguUUUCGC- -5'
7023 5' -46.1 NC_001875.2 + 4279 0.67 0.999089
Target:  5'- aAAAGUgcAGCAgCGCGCCgaUCAAGcacGCGg -3'
miRNA:   3'- -UUUUA--UCGU-GCGCGGaaAGUUUu--CGC- -5'
7023 5' -46.1 NC_001875.2 + 54985 0.67 0.999089
Target:  5'- -----cGCGCuggGCGCCUUUCGuuucguGGCGa -3'
miRNA:   3'- uuuuauCGUG---CGCGGAAAGUuu----UCGC- -5'
7023 5' -46.1 NC_001875.2 + 50684 0.68 0.998873
Target:  5'- ----cGGCccgaaAgGCGCCUgcuuugUCAAAAGCGa -3'
miRNA:   3'- uuuuaUCG-----UgCGCGGAa-----AGUUUUCGC- -5'
7023 5' -46.1 NC_001875.2 + 48313 0.68 0.998873
Target:  5'- -----uGCGCGaCGCCUUUuaCAAGGGCc -3'
miRNA:   3'- uuuuauCGUGC-GCGGAAA--GUUUUCGc -5'
7023 5' -46.1 NC_001875.2 + 60943 0.68 0.998725
Target:  5'- aAAAAUAGCACuCGCUuuaccagaacgauugUUcUCGAAAGCGg -3'
miRNA:   3'- -UUUUAUCGUGcGCGG---------------AA-AGUUUUCGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.