miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7024 3' -54.4 NC_001875.2 + 101156 1.13 0.001922
Target:  5'- cGUUCGCACCCGAAAAGCAGGGUCGCCg -3'
miRNA:   3'- -CAAGCGUGGGCUUUUCGUCCCAGCGG- -5'
7024 3' -54.4 NC_001875.2 + 130558 1.13 0.001922
Target:  5'- cGUUCGCACCCGAAAAGCAGGGUCGCCg -3'
miRNA:   3'- -CAAGCGUGGGCUUUUCGUCCCAGCGG- -5'
7024 3' -54.4 NC_001875.2 + 130492 1.13 0.001922
Target:  5'- cGUUCGCACCCGAAAAGCAGGGUCGCCg -3'
miRNA:   3'- -CAAGCGUGGGCUUUUCGUCCCAGCGG- -5'
7024 3' -54.4 NC_001875.2 + 130396 1.13 0.001922
Target:  5'- cGUUCGCACCCGAAAAGCAGGGUCGCCg -3'
miRNA:   3'- -CAAGCGUGGGCUUUUCGUCCCAGCGG- -5'
7024 3' -54.4 NC_001875.2 + 130072 1.13 0.001922
Target:  5'- cGUUCGCACCCGAAAAGCAGGGUCGCCg -3'
miRNA:   3'- -CAAGCGUGGGCUUUUCGUCCCAGCGG- -5'
7024 3' -54.4 NC_001875.2 + 101618 1.13 0.001922
Target:  5'- cGUUCGCACCCGAAAAGCAGGGUCGCCg -3'
miRNA:   3'- -CAAGCGUGGGCUUUUCGUCCCAGCGG- -5'
7024 3' -54.4 NC_001875.2 + 101552 1.13 0.001922
Target:  5'- cGUUCGCACCCGAAAAGCAGGGUCGCCg -3'
miRNA:   3'- -CAAGCGUGGGCUUUUCGUCCCAGCGG- -5'
7024 3' -54.4 NC_001875.2 + 101486 1.13 0.001922
Target:  5'- cGUUCGCACCCGAAAAGCAGGGUCGCCg -3'
miRNA:   3'- -CAAGCGUGGGCUUUUCGUCCCAGCGG- -5'
7024 3' -54.4 NC_001875.2 + 101420 1.13 0.001922
Target:  5'- cGUUCGCACCCGAAAAGCAGGGUCGCCg -3'
miRNA:   3'- -CAAGCGUGGGCUUUUCGUCCCAGCGG- -5'
7024 3' -54.4 NC_001875.2 + 101354 1.13 0.001922
Target:  5'- cGUUCGCACCCGAAAAGCAGGGUCGCCg -3'
miRNA:   3'- -CAAGCGUGGGCUUUUCGUCCCAGCGG- -5'
7024 3' -54.4 NC_001875.2 + 101288 1.13 0.001922
Target:  5'- cGUUCGCACCCGAAAAGCAGGGUCGCCg -3'
miRNA:   3'- -CAAGCGUGGGCUUUUCGUCCCAGCGG- -5'
7024 3' -54.4 NC_001875.2 + 101222 1.13 0.001922
Target:  5'- cGUUCGCACCCGAAAAGCAGGGUCGCCg -3'
miRNA:   3'- -CAAGCGUGGGCUUUUCGUCCCAGCGG- -5'
7024 3' -54.4 NC_001875.2 + 130264 1.08 0.004129
Target:  5'- cGUUCGCACCCGAAAAGCAGGGUCGUCg -3'
miRNA:   3'- -CAAGCGUGGGCUUUUCGUCCCAGCGG- -5'
7024 3' -54.4 NC_001875.2 + 130198 1.08 0.004129
Target:  5'- cGUUCGCACCCGAAAAGCAGGGUCGUCg -3'
miRNA:   3'- -CAAGCGUGGGCUUUUCGUCCCAGCGG- -5'
7024 3' -54.4 NC_001875.2 + 130132 1.08 0.004129
Target:  5'- cGUUCGCACCCGAAAAGCAGGGUCGUCg -3'
miRNA:   3'- -CAAGCGUGGGCUUUUCGUCCCAGCGG- -5'
7024 3' -54.4 NC_001875.2 + 129940 1.05 0.006677
Target:  5'- cGUgCGCACCCGAAAAGCAGGGUCGCCg -3'
miRNA:   3'- -CAaGCGUGGGCUUUUCGUCCCAGCGG- -5'
7024 3' -54.4 NC_001875.2 + 17088 0.96 0.025786
Target:  5'- cGUUCGCACCCGAAAAGCAcGGUCGUCg -3'
miRNA:   3'- -CAAGCGUGGGCUUUUCGUcCCAGCGG- -5'
7024 3' -54.4 NC_001875.2 + 17154 0.94 0.035055
Target:  5'- cGUUgGCACCCGAAAAGCAcGGUCGCCg -3'
miRNA:   3'- -CAAgCGUGGGCUUUUCGUcCCAGCGG- -5'
7024 3' -54.4 NC_001875.2 + 130006 0.93 0.041419
Target:  5'- cGUUCaCACCCGAAAAGCAGGGUCGUUg -3'
miRNA:   3'- -CAAGcGUGGGCUUUUCGUCCCAGCGG- -5'
7024 3' -54.4 NC_001875.2 + 130333 0.88 0.080139
Target:  5'- --cCGCACCCaAAAGGCAGGGUCGUCg -3'
miRNA:   3'- caaGCGUGGGcUUUUCGUCCCAGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.