miRNA display CGI


Results 21 - 40 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7024 5' -53.2 NC_001875.2 + 74548 0.68 0.903534
Target:  5'- --cGCGCGC-CCGUUCGcguuGGAGCGcuuUUCg -3'
miRNA:   3'- gauCGUGUGcGGCAAGC----UCUCGC---AAG- -5'
7024 5' -53.2 NC_001875.2 + 113591 0.68 0.903534
Target:  5'- -gGGCcaGCACGgCGUUCGAGucGGCGg-- -3'
miRNA:   3'- gaUCG--UGUGCgGCAAGCUC--UCGCaag -5'
7024 5' -53.2 NC_001875.2 + 14532 0.68 0.899611
Target:  5'- uUGGCggGCACGCCGcuUguguugaaaaauuaaUCGGGAGaCGUUCu -3'
miRNA:   3'- gAUCG--UGUGCGGC--A---------------AGCUCUC-GCAAG- -5'
7024 5' -53.2 NC_001875.2 + 111202 0.68 0.890112
Target:  5'- -cGGCGCGCGCCGUUuuuuguugcucaCGGGcGUGggCa -3'
miRNA:   3'- gaUCGUGUGCGGCAA------------GCUCuCGCaaG- -5'
7024 5' -53.2 NC_001875.2 + 76954 0.68 0.883038
Target:  5'- aCUGGCGgACGaguccgCGUUCGGGAGCa--- -3'
miRNA:   3'- -GAUCGUgUGCg-----GCAAGCUCUCGcaag -5'
7024 5' -53.2 NC_001875.2 + 96221 0.68 0.883038
Target:  5'- aUAGUcCGCGUCGgcgUUGGGcGCGUUCa -3'
miRNA:   3'- gAUCGuGUGCGGCa--AGCUCuCGCAAG- -5'
7024 5' -53.2 NC_001875.2 + 94441 0.68 0.883038
Target:  5'- ---cCACGCGCCGUUCGAacGGCGg-- -3'
miRNA:   3'- gaucGUGUGCGGCAAGCUc-UCGCaag -5'
7024 5' -53.2 NC_001875.2 + 118633 0.69 0.875728
Target:  5'- uUAGcCACGUGCCGgcCGAGgcaaaGGCGUUCa -3'
miRNA:   3'- gAUC-GUGUGCGGCaaGCUC-----UCGCAAG- -5'
7024 5' -53.2 NC_001875.2 + 33045 0.69 0.868187
Target:  5'- -gGGCGcCGCGCCGcgCGGauAGCGUUCc -3'
miRNA:   3'- gaUCGU-GUGCGGCaaGCUc-UCGCAAG- -5'
7024 5' -53.2 NC_001875.2 + 94478 0.69 0.860421
Target:  5'- -cGGCGCGCG-CGUUCGcacGAGCGcgCg -3'
miRNA:   3'- gaUCGUGUGCgGCAAGCu--CUCGCaaG- -5'
7024 5' -53.2 NC_001875.2 + 44665 0.69 0.844239
Target:  5'- uCUGGCGCACGCUG-UCGuuGGUGa-- -3'
miRNA:   3'- -GAUCGUGUGCGGCaAGCucUCGCaag -5'
7024 5' -53.2 NC_001875.2 + 74119 0.7 0.82724
Target:  5'- gCUGGCGCGuguuCGCCuagagcuggaGUUCGAGGGCGc-- -3'
miRNA:   3'- -GAUCGUGU----GCGG----------CAAGCUCUCGCaag -5'
7024 5' -53.2 NC_001875.2 + 53915 0.7 0.82724
Target:  5'- --uGgGCGCGCCGUUgCGGGcGCGUUg -3'
miRNA:   3'- gauCgUGUGCGGCAA-GCUCuCGCAAg -5'
7024 5' -53.2 NC_001875.2 + 123510 0.7 0.818454
Target:  5'- -aGGCAUggACGUugaUGUUCGAGGGCGUg- -3'
miRNA:   3'- gaUCGUG--UGCG---GCAAGCUCUCGCAag -5'
7024 5' -53.2 NC_001875.2 + 14395 0.7 0.800352
Target:  5'- -aAGCACugGUCGgg-GGGAGCGUa- -3'
miRNA:   3'- gaUCGUGugCGGCaagCUCUCGCAag -5'
7024 5' -53.2 NC_001875.2 + 93392 0.7 0.800352
Target:  5'- uCUAGCGCGCGCCGgcacuugcugcuUUCGuAG-GCGggCu -3'
miRNA:   3'- -GAUCGUGUGCGGC------------AAGC-UCuCGCaaG- -5'
7024 5' -53.2 NC_001875.2 + 55321 0.71 0.759346
Target:  5'- gUGGCGCgcgacggugaugacGCGCCGcUUCGGGGGCGc-- -3'
miRNA:   3'- gAUCGUG--------------UGCGGC-AAGCUCUCGCaag -5'
7024 5' -53.2 NC_001875.2 + 51207 0.71 0.742481
Target:  5'- uCUGGCGC-CGCCcgUCGAGcgcGCGUUCc -3'
miRNA:   3'- -GAUCGUGuGCGGcaAGCUCu--CGCAAG- -5'
7024 5' -53.2 NC_001875.2 + 114937 0.73 0.670462
Target:  5'- -aGGCcCGCGCCGUcgUCGAuGGGCGUa- -3'
miRNA:   3'- gaUCGuGUGCGGCA--AGCU-CUCGCAag -5'
7024 5' -53.2 NC_001875.2 + 95131 0.74 0.628362
Target:  5'- aUAGCcCACGCCGUUgcuguugaCGuuGGCGUUCa -3'
miRNA:   3'- gAUCGuGUGCGGCAA--------GCucUCGCAAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.